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Command used: wombat bivar.par
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wombat bivar.par
Script started on 2025-05-26 17:15:33+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

	   1 bwt
	   2 tarsus
 Routine "REDUCEPEDS" to eliminate animals not connected to the data
 -> this may not account properly for genotyped animals & their ancestors
    do not use this routine if you have such information - perform equivalent
    calculations yourself prior to running WOMBAT & use run option --norped
 Found redundant animals in pedigree -- new file "ReducedPedFile.dat"
 Total no. of IDs in pedigree file		   =	     1309
 ... no. of IDs "linked" to data		   =	     1145
 Pedigree file					   = ReducedPedFile.dat
 Total no. of animal IDs found			   =	     1145
 No. of "subjects" in data			   =	      854
 No. of combinations of records 		   =		2
 No. of effect codes/ind. (maxnr)		   =		8
 adjact ivcol	  2811024     2811024
 Start of "GENMMD": no. of rows 		   =	     2992
 End of "GENMMD": no of subscripts		   =	    24523
 adjact ivcol	  2811024     2811024
 End of "SMBFCT": maxsub			   =	    23267	  2993
		  maxlnz			   =	    57753
		  nnops 			   = 0.186670E+07 0.100000E+16
 REML analysis has few parameters to be estimated
  --> switching to AI-REML w/out preliminary EM steps
 "Super-nodes" :  No. of nodes			   =	     1661
		  Max. size			   =	      185
 *** AI iterate     0  log L =	-4673.27600	 D =   0.0000	    0.0000	Time	    0	     0
 *** AI iterate     1  log L =	-3130.21765	 D =   1543.1	   0.27212	Time	    0	     0
 *** AI iterate     2  log L =	-2566.51347	 D =   563.70	   0.27165	Time	    0	     0
 *** AI iterate     3  log L =	-2405.38811	 D =   161.13	   0.25486	Time	    0	     0
 *** AI iterate     4  log L =	-2381.31626	 D =   24.072	   0.17643	Time	    0	     0
 *** AI iterate     5  log L =	-2380.35536	 D =  0.96090	   0.87312E-01	Time	    0	     0
 *** AI iterate     6  log L =	-2380.33762	 D =  0.17743E-01  0.14970E-01	Time	    0	     0
 *** AI iterate     7  log L =	-2380.33758	 D =  0.33891E-04  0.51151E-03	Time	    0	     0
 *** AIREML seems to have converged: Change in log L <	0.500000E-03
     Last change in log L			   = 0.338909E-04
     Norm of gradient vector			   = 0.483832E-01 (should be close to 0)
     ... "Cholesky" scale			   = 0.212949E-01 (should be close to 0)
     Newton decrement				   =-0.343790E-04 (should be close to 0)
   1  animal		      2132  zero soln.s       0
   2  mother		       788  zero soln.s       0
   3  byear			68  zero soln.s       0
 SS residuals	785.368       4623.15
 Eigenvalues of AI matrix
    497.036	   155.475	  88.2702	 51.0903	41.7380        25.6719	      18.2414	     11.0861
    5.54902	   3.66606	  2.13422	 1.71930
 Total time used (secs): CPU =		 3  System =	       0
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


2.869u 0.325s 0:00.69 460.8%	0+0k 0+2120io 0pf+0w

Script done on 2025-05-26 17:15:34+1000
