======================================================
Command used: wombat bivar_cov0.par
======================================================

wombat bivar_cov0.par
Script started on 2025-05-26 17:15:34+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

	   1 bwt
	   2 tarsus
 Routine "REDUCEPEDS" to eliminate animals not connected to the data
 -> this may not account properly for genotyped animals & their ancestors
    do not use this routine if you have such information - perform equivalent
    calculations yourself prior to running WOMBAT & use run option --norped
 Found redundant animals in pedigree -- new file "ReducedPedFile.dat"
 Total no. of IDs in pedigree file		   =	     1309
 ... no. of IDs "linked" to data		   =	     1145
 Pedigree file					   = ReducedPedFile.dat
 Total no. of animal IDs found			   =	     1145
 No. of "subjects" in data			   =	      854
 No. of combinations of records 		   =		2
 No. of effect codes/ind. (maxnr)		   =		8
 adjact ivcol	  2811024     2811024
 Start of "GENMMD": no. of rows 		   =	     2992
 End of "GENMMD": no of subscripts		   =	    24523
 adjact ivcol	  2811024     2811024
 End of "SMBFCT": maxsub			   =	    23267	  2993
		  maxlnz			   =	    57753
		  nnops 			   = 0.186670E+07 0.100000E+16
 REML analysis has few parameters to be estimated
  --> switching to AI-REML w/out preliminary EM steps
 "Super-nodes" :  No. of nodes			   =	     1661
		  Max. size			   =	      185
 *** AI iterate     0  log L =	-4715.92309	 D =   0.0000	    0.0000	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.297540E-13   11 of   11
 *** AI iterate     1  log L =	-3121.24918	 D =   1594.7	   0.34123	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.276237E-13   11 of   11
 *** AI iterate     2  log L =	-2549.52513	 D =   571.72	   0.35502	Time	    0	     0
AI matrix: Found pivot less than "zero" ...-0.766748E-14   11 of   11
 *** AI iterate     3  log L =	-2404.71148	 D =   144.81	   0.31243	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.176525E-13   11 of   11
 *** AI iterate     4  log L =	-2390.04117	 D =   14.670	   0.10643	Time	    0	     0
AI matrix: Found pivot less than "zero" ...-0.438538E-14   11 of   11
 *** AI iterate     5  log L =	-2389.60176	 D =  0.43941	   0.33197E-01	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.294209E-14   11 of   11
 *** AI iterate     6  log L =	-2389.58825	 D =  0.13514E-01  0.27120E-02	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.129896E-13   11 of   11
 *** AI iterate     7  log L =	-2389.58590	 D =  0.23471E-02  0.74044E-03	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.338618E-13   11 of   11
 *** AI iterate     8  log L =	-2389.58532	 D =  0.58250E-03  0.39628E-03	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.106581E-13   11 of   11
 *** AI iterate     9  log L =	-2389.58517	 D =  0.15020E-03  0.20394E-03	Time	    0	     0
 *** AIREML seems to have converged: Change in log L <	0.500000E-03
     Last change in log L			   = 0.150195E-03
     Norm of gradient vector			   = 0.518115	  (should be close to 0)
     ... "Cholesky" scale			   = 0.927481	  (should be close to 0)
     Newton decrement				   =-0.200399E-03 (should be close to 0)
AI matrix: Found pivot less than "zero" ... 0.242029E-13   11 of   11
   1  animal		      2132  zero soln.s       3
   2  mother		       788  zero soln.s       0
   3  byear			68  zero soln.s       0
 SS residuals	1552.34       10499.6
 Eigenvalues of AI matrix
    747.190	   388.590	  197.117	 51.0816	47.8334        23.0910	      10.8364	     5.37944
    4.90052	   4.05782	-0.224648E-13
 Total time used (secs): CPU =		 3  System =	       0
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


3.361u 0.300s 0:00.75 488.0%	0+0k 0+2120io 0pf+0w

Script done on 2025-05-26 17:15:35+1000
