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Command used: wombat repeat.par
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wombat repeat.par
Script started on 2025-05-26 17:15:35+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

 Routine "REDUCEPEDS" to eliminate animals not connected to the data
 -> this may not account properly for genotyped animals & their ancestors
    do not use this routine if you have such information - perform equivalent
    calculations yourself prior to running WOMBAT & use run option --norped
 Found redundant animals in pedigree -- new file "ReducedPedFile.dat"
 Total no. of IDs in pedigree file		   =	     1309
 ... no. of IDs "linked" to data		   =	      616
 Pedigree file					   = ReducedPedFile.dat
 Total no. of animal IDs found			   =	      616
 No. of "subjects" in data			   =	      469
 No. of combinations of records 		   =		5
 No. of effect codes/ind. (maxnr)		   =		2
 adjact ivcol	   623790      623790
 Start of "GENMMD": no. of rows 		   =	     1011
 End of "GENMMD": no of subscripts		   =	     1715
 adjact ivcol	   623790      623790
 End of "SMBFCT": maxsub			   =	     2468	  1012
		  maxlnz			   =	     2659
		  nnops 			   =  9171.00	  0.100000E+16
 REML analysis has few parameters to be estimated
  --> switching to AI-REML w/out preliminary EM steps
 "Super-nodes" :  No. of nodes			   =	      980
		  Max. size			   =	       19
 *** AI iterate     0  log L =	-14455.1081	 D =   0.0000	    0.0000	Time	    0	     0
 *** AI iterate     1  log L =	-9963.25665	 D =   4491.9	   0.18182	Time	    0	     0
 *** AI iterate     2  log L =	-5715.81490	 D =   4247.4	   0.29524	Time	    0	     0
 *** AI iterate     3  log L =	-4109.58218	 D =   1606.2	   0.25733	Time	    0	     0
 *** AI iterate     4  log L =	-3606.22895	 D =   503.35	   0.20073	Time	    0	     0
 *** AI iterate     5  log L =	-3500.04698	 D =   106.18	   0.13838	Time	    0	     0
 *** AI iterate     6  log L =	-3490.54743	 D =   9.4996	   0.66983E-01	Time	    0	     0
 *** AI iterate     7  log L =	-3490.41497	 D =  0.13246	   0.11075E-01	Time	    0	     0
 *** AI iterate     8  log L =	-3490.41493	 D =  0.41562E-04  0.26475E-03	Time	    0	     0
 *** AIREML seems to have converged: Change in log L <	0.500000E-03
     Last change in log L			   = 0.415620E-04
     Norm of gradient vector			   = 0.831603E-01 (should be close to 0)
     ... "Cholesky" scale			   = 0.942765E-02 (should be close to 0)
     Newton decrement				   =-0.414503E-04 (should be close to 0)
   1  animal		       542  zero soln.s       0
   2  permenv		       469  zero soln.s       0
 SS residuals	20366.4
 Eigenvalues of AI matrix
    116.397	   30.2289	  3.77653
 Total time used (secs): CPU =		 1  System =	       0
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


0.891u 0.262s 0:00.42 273.8%	0+0k 0+904io 0pf+0w

Script done on 2025-05-26 17:15:35+1000
