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Command used: wombat mrr2.par
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wombat mrr2.par
Script started on 2025-05-26 17:15:37+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
	   1 simone
	   2 simtwo
 Routine "REDUCEPEDS" to eliminate animals not connected to the data
 -> this may not account properly for genotyped animals & their ancestors
    do not use this routine if you have such information - perform equivalent
    calculations yourself prior to running WOMBAT & use run option --norped
 Pedigree file					   = ../mrrped.dat
 Total no. of animal IDs found			   =	      784
 No. of "subjects" in data			   =	      436
 No. of combinations of records 		   =		1
 No. of effect codes/ind. (maxnr)		   =	       20
 adjact ivcol	  3884706     3884706
 Start of "GENMMD": no. of rows 		   =	     4254
 End of "GENMMD": no of subscripts		   =	    37037
 adjact ivcol	  3884706     3884706
 End of "SMBFCT": maxsub			   =	    28631	  4255
		  maxlnz			   =	   161981
		  nnops 			   = 0.962258E+07 0.100000E+16
 "Super-nodes" :  No. of nodes			   =	      977
		  Max. size			   =	      331
 *** EM round	    0  log L =	-13447.5972	 D =   0.0000	    0.0000	Time	    1	     0
 *** EM round	    1  log L =	-13445.5221	 D =   2.0751	   0.26414E-01	Time	    0	     0
 *** EM round	    2  log L =	-13444.2075	 D =   1.3147	   0.21200E-01	Time	    0	     0
 *** AI iterate     3  log L =	-13437.8308	 D =   6.3767	   0.23734	Time	    0	     0
 *** AI iterate     4  log L =	-13437.4286	 D =  0.40218	   0.23437E-01	Time	    0	     0
 *** AI iterate     5  log L =	-13436.7517	 D =  0.67694	   0.39511E-01	Time	    0	     0
 *** AI iterate     6  log L =	-13436.0162	 D =  0.73545	   0.37704E-01	Time	    0	     0
 *** AI iterate     7  log L =	-13436.0078	 D =  0.83994E-02  0.10764E-01	Time	    0	     0
 ***** Routine "CHOLESKY": negative/small pivot encountered
       Random effect no. =	     2	 "subject"
       Order of fit	 =	     4
       Pivot no.	 =	     4	5.105656220898425E-004 limit  1.000000000000000E-003
 Continue setting this pivot to   1.000000000000000E-003  ...
AI matrix: Found pivot less than "zero" ... 0.137060E-09   23 of   23
 *** AI iterate     8  log L =	-13435.9990	 D =  0.88122E-02  0.38336E-02	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.141355E-09   23 of   23
 *** AI iterate     9  log L =	-13435.9990	 D =  0.37623E-04  0.80063E-03	Time	    0	     0
 *** AIREML seems to have converged: Change in log L <	0.500000E-03
     Last change in log L			   = 0.376230E-04
     Norm of gradient vector			   = 0.103816E-01 (should be close to 0)
     ... "Cholesky" scale			   = 0.569545E-02 (should be close to 0)
     Newton decrement				   =-0.711910E-04 (should be close to 0)
AI matrix: Found pivot less than "zero" ... 0.138767E-09   23 of   23
   1  animal		      2340  zero soln.s       0
   2  subject		      1744  zero soln.s       0
 SS residuals	630374.       573700.
 Eigenvalues of AI matrix
    205.933	   175.529	  5.84042	 2.02653	1.71187        1.03127	     0.420379	    0.365539
   0.337768	  0.311723	 0.278609	0.219672       0.777984E-01   0.558863E-01   0.445681E-01   0.425690E-01
   0.390679E-01   0.321157E-01	 0.186850E-01	0.142245E-01   0.117481E-01   0.559574E-02   0.138767E-09
 Total time used (secs): CPU =		 8  System =	       1
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


8.230u 0.360s 0:01.41 609.2%	0+0k 0+5032io 0pf+0w

Script done on 2025-05-26 17:15:38+1000
