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Command used: wombat aligned2.par
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wombat aligned2.par
Script started on 2025-05-26 17:15:41+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

	   1 x1
	   2 x2
	   3 x3
	   4 x4
 Routine "REDUCEPEDS" to eliminate animals not connected to the data
 -> this may not account properly for genotyped animals & their ancestors
    do not use this routine if you have such information - perform equivalent
    calculations yourself prior to running WOMBAT & use run option --norped
 Pedigree file					   = ../SimPedigree.dat
 Total no. of animal IDs found			   =	     1300
 No. of "subjects" in data			   =	      800
 No. of combinations of records 		   =		1
 No. of effect codes/ind. (maxnr)		   =	       12
 WARNING:
 Unequal no. of repeated records for combination	   1  n=	 800
 Trait =	    1  No. of observations =	       5
 Trait =	    3  No. of observations =	       2
 WARNING:
 Unequal no. of repeated records for combination	   1  n=	 800
 Trait =	    1  No. of observations =	       5
 Trait =	    4  No. of observations =	       2
 WARNING:
 Unequal no. of repeated records for combination	   1  n=	 800
 Trait =	    2  No. of observations =	       5
 Trait =	    3  No. of observations =	       2
 WARNING:
 Unequal no. of repeated records for combination	   1  n=	 800
 Trait =	    2  No. of observations =	       5
 Trait =	    4  No. of observations =	       2
 Option set: residual covariances among repeated records for different traits: "ALIGNED"
 adjact ivcol	 13073940    13073940
 Start of "AMD": no. of rows			   =	     8404
 End of "AMD": no of subscripts 		   =	   168515
 adjact ivcol	 13073940    13073940
 End of "SMBFCT": maxsub			   =	    23999	  8405
		  maxlnz			   =	   101006
		  nnops 			   =  786168.	  0.100000E+16
 "Super-nodes" :  No. of nodes			   =	     1400
		  Max. size			   =	       16
 *** AI iterate     0  log L =	-34811.4157	 D =   0.0000	    0.0000	Time	    2	     0
 *** AI iterate     1  log L =	-34315.6525	 D =   495.76	   0.10249	Time	    1	     0
 *** AI iterate     2  log L =	-34018.5264	 D =   297.13	   0.27407	Time	    1	     0
 *** AI iterate     3  log L =	-33839.4717	 D =   179.05	   0.76921E-01	Time	    1	     0
 *** AI iterate     4  log L =	-33830.2897	 D =   9.1820	   0.19680E-01	Time	    1	     0
 *** AI iterate     5  log L =	-33830.2477	 D =  0.42053E-01  0.18085E-02	Time	    1	     0
 *** AI iterate     6  log L =	-33830.2477	 D =  0.84462E-05  0.96262E-04	Time	    1	     0
 *** AIREML seems to have converged: Change in log L <	0.500000E-03
     Last change in log L			   = 0.844622E-05
     Norm of gradient vector			   = 0.138046E-01 (should be close to 0)
     ... "Cholesky" scale			   = 0.978677E-03 (should be close to 0)
     Newton decrement				   =-0.820088E-05 (should be close to 0)
   1  animal		      5200  zero soln.s       0
   2  peanim		      3200  zero soln.s       0
 SS residuals	216666.       321646.	    238842.	  299767.
 Eigenvalues of AI matrix
    123.004	   90.9611	  33.3475	 33.0419	31.8745        16.6865	      15.5002	     13.3465
    11.7146	   10.9431	  8.96911	 7.35347	6.33132        5.12156	      4.72303	     4.36282
    4.20182	   2.87371	  2.30406	 1.39204	1.23187        1.09135	     0.841293	    0.656959
   0.598598	  0.510827	 0.428075	0.332598       0.314935       0.189669
 Total time used (secs): CPU =		10  System =	       1
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


9.682u 0.627s 0:01.79 575.4%	0+0k 0+6104io 0pf+0w

Script done on 2025-05-26 17:15:43+1000
