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Command used: wombat indescr.par
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wombat indescr.par
Script started on 2025-05-26 17:15:52+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

	   1 x1
	   2 x2
	   3 x3
	   4 x4
 Routine "REDUCEPEDS" to eliminate animals not connected to the data
 -> this may not account properly for genotyped animals & their ancestors
    do not use this routine if you have such information - perform equivalent
    calculations yourself prior to running WOMBAT & use run option --norped
 Pedigree file					   = ../SimPedigree.dat
 Total no. of animal IDs found			   =	     1300
 No. of "subjects" in data			   =	      800
 No. of combinations of records 		   =		1
 No. of effect codes/ind. (maxnr)		   =		9
 WARNING:
 Unequal no. of repeated records for combination	   1  n=	 800
 Trait =	    1  No. of observations =	       4
 Trait =	    2  No. of observations =	       1
 WARNING:
 Unequal no. of repeated records for combination	   1  n=	 800
 Trait =	    1  No. of observations =	       4
 Trait =	    3  No. of observations =	       1
 WARNING:
 Unequal no. of repeated records for combination	   1  n=	 800
 Trait =	    1  No. of observations =	       4
 Trait =	    4  No. of observations =	       1
 Option set: residual covariances among repeated records for different traits: "INDESCR"
 adjact ivcol	  9509940     9509940
 Start of "AMD": no. of rows			   =	     6004
 End of "AMD": no of subscripts 		   =	   120515
 adjact ivcol	  9509940     9509940
 End of "SMBFCT": maxsub			   =	    21599	  6005
		  maxlnz			   =	    74606
		  nnops 			   =  600568.	  0.100000E+16
 "Super-nodes" :  No. of nodes			   =	     1400
		  Max. size			   =	       16
 *** AI iterate     0  log L =	-17463.9599	 D =   0.0000	    0.0000	Time	    1	     0
 *** AI iterate     1  log L =	-17457.8363	 D =   6.1235	   0.74599E-01	Time	    0	     0
 *** AI iterate     2  log L =	-17455.2229	 D =   2.6135	   0.50010E-01	Time	    0	     0
 *** AI iterate     3  log L =	-17453.9504	 D =   1.2724	   0.40547E-01	Time	    0	     0
 *** AI iterate     4  log L =	-17453.7941	 D =  0.15633	   0.59690E-01	Time	    0	     0
 ***** Routine "CHOLESKY": negative/small pivot encountered
       Random effect no. =	     1	 "animal"
       Order of fit	 =	     4
       Pivot no.	 =	     4	3.658194642497392E-005 limit  1.000000000000000E-003
 Continue setting this pivot to   1.000000000000000E-003  ...
AI matrix: Found pivot less than "zero" ... 0.704811E-08   21 of   21
 *** AI iterate     5  log L =	-17449.6974	 D =   4.0968	   0.84945E-01	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.224152E-08   21 of   21
 *** AI iterate     6  log L =	-17449.3920	 D =  0.30534	   0.56404E-01	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.876723E-08   21 of   21
 *** AI iterate     7  log L =	-17448.9710	 D =  0.42104	   0.28311E-01	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.464370E-08   21 of   21
 *** AI iterate     8  log L =	-17448.8616	 D =  0.10934	   0.13881E-01	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.436015E-08   21 of   21
 *** AI iterate     9  log L =	-17448.8560	 D =  0.56634E-02  0.77039E-02	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.474487E-08   21 of   21
 *** AI iterate    10  log L =	-17448.8551	 D =  0.90682E-03  0.52008E-02	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.426363E-08   21 of   21
 *** AI iterate    11  log L =	-17448.8526	 D =  0.24802E-02  0.22717E-02	Time	    0	     0
AI matrix: Found pivot less than "zero" ... 0.457843E-08   21 of   21
 *** AI iterate    12  log L =	-17448.8524	 D =  0.18535E-03  0.69162E-03	Time	    0	     0
 *** AIREML seems to have converged: Change in log L <	0.500000E-03
     Last change in log L			   = 0.185354E-03
     Norm of gradient vector			   = 0.229188E-01 (should be close to 0)
     ... "Cholesky" scale			   = 0.306719	  (should be close to 0)
     Newton decrement				   =-0.397236E-03 (should be close to 0)
AI matrix: Found pivot less than "zero" ... 0.453074E-08   21 of   21
   1  animal		      5200  zero soln.s       0
   2  peanim		       800  zero soln.s       0
 SS residuals	171382.       104639.	    142792.	  196064.
 Eigenvalues of AI matrix
    210.589	   91.2669	  48.1761	 20.7650	8.91555        8.06473	      7.34215	     6.13330
    6.00878	   4.51486	  2.97353	 1.98300	1.62175        1.42575	     0.719919	    0.583488
   0.481781	  0.342294	 0.178064	0.158867       0.453074E-08
 Total time used (secs): CPU =		11  System =	       1
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


11.009u 0.595s 0:01.95 594.3%	0+0k 0+4256io 0pf+0w

Script done on 2025-05-26 17:15:54+1000
