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Command used: wombat tselect2.par
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wombat tselect2.par
Script started on 2025-05-26 17:15:54+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

	   1 x1
	   2 x2
	   3 x3
	   4 x4
 repeat time "mtime"
 peqcolumn	     5		 5	     5		 5	     5
 Routine "REDUCEPEDS" to eliminate animals not connected to the data
 -> this may not account properly for genotyped animals & their ancestors
    do not use this routine if you have such information - perform equivalent
    calculations yourself prior to running WOMBAT & use run option --norped
 Pedigree file					   = ../SimPedigree.dat
 Total no. of animal IDs found			   =	     1300
 No. of "subjects" in data			   =	      800
 No. of combinations of records 		   =		1
 No. of effect codes/ind. (maxnr)		   =	       12
 WARNING:
 Unequal no. of repeated records for combination	   1  n=	 800
 Trait =	    1  No. of observations =	       5
 Trait =	    2  No. of observations =	       1
 WARNING:
 Unequal no. of repeated records for combination	   1  n=	 800
 Trait =	    1  No. of observations =	       5
 Trait =	    3  No. of observations =	       1
 WARNING:
 Unequal no. of repeated records for combination	   1  n=	 800
 Trait =	    1  No. of observations =	       5
 Trait =	    4  No. of observations =	       1
 Option set: residual covariances among repeated records for different traits: "TSELECT"
 adjact ivcol	  8321940     8321940
 Start of "AMD": no. of rows			   =	     5204
 End of "AMD": no of subscripts 		   =	   106416
 adjact ivcol	  8321940     8321940
 End of "SMBFCT": maxsub			   =	    12800	  5205
		  maxlnz			   =	    65810
		  nnops 			   =  535030.	  0.100000E+16
 "Super-nodes" :  No. of nodes			   =	      600
		  Max. size			   =	       17
 *** AI iterate     0  log L =	-19852.2454	 D =   0.0000	    0.0000	Time	    1	     0
 *** AI iterate     1  log L =	-19818.7458	 D =   33.500	   0.52470	Time	    1	     0
 *** AI iterate     2  log L =	-19682.5062	 D =   136.24	   0.44005	Time	    1	     0
 *** AI iterate     3  log L =	-19643.1393	 D =   39.367	   0.38719	Time	    1	     0
 *** AI iterate     4  log L =	-19628.4015	 D =   14.738	   0.11622	Time	    1	     0
 *** AI iterate     5  log L =	-19618.8601	 D =   9.5414	   0.11435	Time	    1	     0
 ***** Routine "CHOLESKY": negative/small pivot encountered
       Random effect no. =	     1	 "animal"
       Order of fit	 =	     4
       Pivot no.	 =	     4	2.934760096575673E-004 limit  1.000000000000000E-003
 Continue setting this pivot to   1.000000000000000E-003  ...
 *** AI iterate     6  log L =	-19606.3398	 D =   12.520	   0.99878E-01	Time	    1	     0
AI matrix: Found pivot less than "zero" ... 0.590026E-08   24 of   24
 *** AI iterate     7  log L =	-19604.8429	 D =   1.4969	   0.47504E-01	Time	    1	     0
AI matrix: Found pivot less than "zero" ... 0.880061E-08   24 of   24
 *** AI iterate     8  log L =	-19604.7756	 D =  0.67303E-01  0.13687E-01	Time	    1	     0
AI matrix: Found pivot less than "zero" ... 0.802568E-08   24 of   24
 *** AI iterate     9  log L =	-19604.7726	 D =  0.30611E-02  0.40721E-02	Time	    1	     0
AI matrix: Found pivot less than "zero" ... 0.851580E-08   24 of   24
 *** AI iterate    10  log L =	-19604.7723	 D =  0.21606E-03  0.22048E-02	Time	    1	     0
 *** AIREML seems to have converged: Change in log L <	0.500000E-03
     Last change in log L			   = 0.216057E-03
     Norm of gradient vector			   = 0.648219E-01 (should be close to 0)
     ... "Cholesky" scale			   = 0.194923	  (should be close to 0)
     Newton decrement				   =-0.824624E-03 (should be close to 0)
AI matrix: Found pivot less than "zero" ... 0.816269E-08   24 of   24
   1  animal		      5200  zero soln.s       0
   2  peanim		      3200  zero soln.s       0
 SS residuals	943116.       120079.	    147538.	  199026.
 Eigenvalues of AI matrix
    192.827	   119.486	  66.8506	 27.9219	11.8873        9.85134	      8.32138	     6.76214
    6.27715	   5.28609	  4.89311	 3.89383	3.42347        2.76886	      2.33261	     1.60082
    1.17186	  0.612162	 0.577154	0.470447       0.239717       0.200716	     0.148608	    0.816269E-08
 Total time used (secs): CPU =		16  System =	       2
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


15.549u 0.614s 0:02.57 628.4%	0+0k 0+4584io 0pf+0w

Script done on 2025-05-26 17:15:57+1000
