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Command used: wombat poolC.par
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wombat poolC.par
Script started on 2025-05-26 17:21:05+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

 Parameter file opened : "poolC.par"
**RUNOP --pool -v**
**COM Example15/C: Pooling applying `Beta' Penalty on canonocal eigenvalues**
**ANAL MUV 14**
  Analysis type = 2  "MUV 14"
  No. of traits = 14
**PEDS ../PEDSUB.DAT**
  Pedigree file : "../PEDSUB.DAT"
**DATA ../fort.557 GRP**
  Data file : "../fort.557"
**TRNOS 1 2 3 4  11 12 13 14**
**traitno   14**
  Data - column :      1  "traitno"	   14
**animal     0**
  Data - column :      2  "animal"	  -1
**bnimal     0**
  Data - column :      3  "bnimal"	  -1
**btype      2**
  Data - column :      4  "btype"	  2
**hfactor    3**
  Data - column :      5  "hfactor"	    3
**cg	   999**
  Data - column :      6  "cg"	     999
**damage     0**
  Data - column :      7  "damage"	  -1
**age	     0**
  Data - column :      8  "age"        -1
**NAMES hp8fat hribfat hema hpimf bp8fat  bribfat bema	bpimf**
	   1 hp8fat
	   2 hribfat
	   3 hema
	   4 hpimf
	  11 bp8fat
	  12 bribfat
	  13 bema
	  14 bpimf
**sex	     3**
  Data - column :     10  "sex" 	3
**TRNOS 5 6 7 8 9 10**
**traitno   14**
  Data - column :      1  "traitno"	   14
**animal     0**
  Data - column :      2  "animal"	  -1
**bnimal     0**
  Data - column :      3  "bnimal"	  -1
**cg	   899**
  Data - column :      4  "cg"	     899
**NAMES cwgt cema cimf crby cp8  crib**
	   5 cwgt
	   6 cema
	   7 cimf
	   8 crby
	   9 cp8
	  10 crib
**END**
**MODEL**
**FIX btype 1 2  3 4 11 12 13 14**
**FIX hfactor 1 2 3 4 11 12 13 14**
**FIX cg 1 2 3 4 5 6 7 8 9 10 11 12 13 14**
**COV damage(2) 1 2 3 4 11 12 13 14**
**COV sex*age(2) 1 2 3 4  11 12 13 14**
**RAN animal  nrm 1 2 3 4 5 6 7 8 9 10 11 12 13 14**
**EXT sex 1 2 3 4 11 12 13 14**
**trait hp8fat	 1**
  Trait no.  1	"hp8fat"  Missing value  -123456789
**tr	hribfat  2**
  Trait no.  2	"hribfat"  Missing value  -123456789
**tr	hema	 3**
  Trait no.  3	"hema"	Missing value  -123456789
**tr	hpimf	 4**
  Trait no.  4	"hpimf"  Missing value	-123456789
**tr	cwgt	 5**
  Trait no.  5	"cwgt"	Missing value  -123456789
**tr	cema	 6**
  Trait no.  6	"cema"	Missing value  -123456789
**tr	cimf	 7**
  Trait no.  7	"cimf"	Missing value  -123456789
**tr	crby	 8**
  Trait no.  8	"crby"	Missing value  -123456789
**tr	cp8	 9**
  Trait no.  9	"cp8"  Missing value  -123456789
**tr	crib	10**
  Trait no. 10	"crib"	Missing value  -123456789
**tr	bp8fat	11**
  Trait no. 11	"bp8fat"  Missing value  -123456789
**tr	bribfat 12**
  Trait no. 12	"bribfat"  Missing value  -123456789
**tr	bema	13**
  Trait no. 13	"bema"	Missing value  -123456789
**tr	bpimf	14**
  Trait no. 14	"bpimf"  Missing value	-123456789
**END MOD**
**VAR residual 14**
**2.656    1.360    2.242    7.079    1.263    1.635   -0.112	-0.473**
**1.192    0.620    0.000    0.000    0.000    0.000**
**1.525    1.643    5.720    2.822    1.034    0.840   -0.203	 0.610**
**0.652    0.000    0.000    0.000    0.000**
**21.727   12.077   22.235   12.052   -0.755	0.733	 1.097	  0.443**
**0.000    0.000    0.000    0.000**
**158.920  -19.613   11.412    0.000	0.000	 7.449	  3.082    0.000**
**0.000    0.000    0.000**
**388.271  -18.762  -79.917   25.486  -13.706  -13.668	  0.000    0.000**
**0.000    0.000**
**27.558   14.844   -2.653    3.511    3.246	0.000	 0.000	  0.000**
**0.000**
**110.811   -7.235    6.102    5.748	0.000	 0.000	  0.000    0.000**
**2.332   -1.531   -1.009    0.000    0.000    0.000	0.000**
**8.008    2.584    0.000    0.000    0.000    0.000**
**5.940    0.000    0.000    0.000    0.000**
**1.223    0.557    1.508    5.242**
**0.678    1.052    3.580**
**32.272   12.293**
**114.277**
**VAR animal 14**
**1.892    0.919    0.688    5.733    3.368   -0.494	4.732	-0.734**
**2.030    1.206    0.738    0.373    0.035    2.758**
**0.898    0.399    4.199    1.657   -0.395    3.089   -0.549	 1.125**
**0.885    0.492    0.326   -0.006    2.353**
**10.073    4.877   24.945    3.934  -13.429	1.333	-0.032	 -0.586**
**0.030    0.038    8.766    2.070**
**72.162   52.690   -6.677   60.603   -3.242	3.296	 2.710	  2.122**
**1.202    1.466   29.395**
**218.823   -8.304   -7.940   -7.626   -0.798	 0.117	  4.489    2.334**
**24.170   58.291**
**5.708  -13.156    2.708   -0.620   -1.145   -0.973   -0.546	 4.221**
**-8.614**
**112.262   -4.038    3.344    2.759	1.107	 0.299	-17.040   19.569**
**2.326   -1.097   -1.208   -0.942   -0.564    1.585   -5.987**
**3.490    1.829    1.052    0.534   -0.786    2.028**
**1.848    0.856    0.538   -1.044    3.073**
**0.792    0.361   -0.222    3.041**
**0.382   -0.090    1.913**
**10.092    0.857**
**32.935**
**POOL**
**deltal 0.012d0**
**small 0.001d0**
 small 0.001d0
**pseuped phs 50 10**
 pseuped phs 50 10
 POOL: Use paternal half-sib families as pseudo pedigree
  ... no. of sires / no.of progeny per sire:	      50	  10
**PENALTY KANEIG 4**
 PENALTY KANEIG 4
 POOL: Penalty on canonical eigenvalues assuming Beta distr.
**END**
 END

 End of parameter file reached :  94 lines read
 POOL/ITSUM:  No. of subsets =		77
 Pool: Start unpenalized analysis
 pseudoped, df-B/W pathalf   49.0000000000000	     450.000000000000
 mscore 	  1  -290816.929106086
  Loop no.     1   MSCORE   log L =	   -290816.9291
  Loop no.     1   POWELL   log L =	   -290795.0570
  Loop no.     1   SIMPLX   log L =	   -290794.8630
  Loop no.     2   MSCORE   log L =	   -290794.8630
  Loop no.     2   POWELL   log L =	   -290794.4643
  Loop no.     2   SIMPLX   log L =	   -290794.4419
  Loop no.     3   MSCORE   log L =	   -290794.4419
  Loop no.     3   POWELL   log L =	   -290794.3540
  Loop no.     3   SIMPLX   log L =	   -290794.3262
  Loop no.     4   POWELL   log L =	   -290794.3188
  Loop no.     4   SIMPLX   log L =	   -290794.2989
  Loop no.     5   POWELL   log L =	   -290794.2765
  Loop no.     5   SIMPLX   log L =	   -290794.2093
  Loop no.     6   POWELL   log L =	   -290794.1762
  Loop no.     6   SIMPLX   log L =	   -290794.1618
  Loop no.     7   POWELL   log L =	   -290794.1537
  Loop no.     7   SIMPLX   log L =	   -290794.1537
  Loop no.     8   POWELL   log L =	   -290794.1215
  Loop no.     8   SIMPLX   log L =	   -290794.1215
  Loop no.     9   POWELL   log L =	   -290794.0920
  Loop no.     9   SIMPLX   log L =	   -290794.0920
  Loop no.    10   POWELL   log L =	   -290794.0626
  Loop no.    10   SIMPLX   log L =	   -290794.0486
  Loop no.    11   POWELL   log L =	   -290793.9920
  Loop no.    11   SIMPLX   log L =	   -290793.9794
  Loop no.    12   POWELL   log L =	   -290793.9637
  Loop no.    12   SIMPLX   log L =	   -290793.9459
 POOL converged: log like	  -290793.946 penalty	   0.000
 Pool: Start penalized analysis for penalty no.    =		1
 pseudoped, df-B/W pathalf   49.0000000000000	     450.000000000000
  Loop no.     1   POWELL   log L =	   -290798.1791
  Loop no.     1   SIMPLX   log L =	   -290798.0960
  Loop no.     2   POWELL   log L =	   -290796.8553
  Loop no.     2   SIMPLX   log L =	   -290796.6961
  Loop no.     3   POWELL   log L =	   -290796.4665
  Loop no.     3   SIMPLX   log L =	   -290796.4252
  Loop no.     4   POWELL   log L =	   -290796.4048
  Loop no.     4   SIMPLX   log L =	   -290796.4048
  Loop no.     5   POWELL   log L =	   -290796.3955
  Loop no.     5   SIMPLX   log L =	   -290796.3922
 POOL converged: log like	  -290796.392 penalty	   4.000
 Output file is "PoolEstimates.out"
 Total time used (secs): CPU =	       175  System =	     175
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


175.271u 0.015s 2:55.28 100.0%	0+0k 0+328io 0pf+0w

Script done on 2025-05-26 17:24:00+1000
