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Command used: wombat s1step.par
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wombat s1step.par
Script started on 2025-05-26 17:25:31+1000
 S1/2STEP: Convergence criterion set to  1.000000000000000E-012  1.000000000000000E-014
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

 Parameter file opened : "s1step.par"
**RUNOP --s1step12 -v**
**COM Example18/A: Simple univariate analysis; conv. criterion set to 1.d-12**
**DAT ../tstmo1.d**
  Data file : "../tstmo1.d"
**animal 666**
  Data - column :	 1  "animal"	   666
**sire**
  Data - column :	 2  "sire"	  -1
**dam**
  Data - column :	 3  "dam"	 -1
**fixeff 9**
  Data - column :	 4  "fixeff"	     9
**record**
  Data - column :	 5  "record"	    -1
**end**
**ANAL UNI**
  Analysis type = 1  "UNI"
  No. of traits =  1
**MODEL**
**RAN animal GIN**
**FIX fixeff**
**TR record**
  Trait no.  1	"record"  Missing value  -123456789
**END**
**VAR animal 1**
**60**
**VAR error 1**
**40**

 End of parameter file reached :  19 lines read
  skipping check for sorting of data
 No. of "subjects" in data			   =	      282
 Maximum no. of records/individual =		   =		1	   399
 File						   = "animal.gin"
 No. of records 				   =	      906
 Denseness of matrix				   =  1.92885	 %
 No. of diagonal elements found 		   =	      306
 No. of zero elements found			   =		0
 No. of elements close to zero			   =		0    0.00%
 Log determinant given				   =  0.00000
 ***** Found more levels of RE in GIN^{-1} than in data
       No. of levels found in data		   =	      282
       Max. row/column no. in GIN^{-1}		   =	      306



 ***** Looking for file with codes "animal.codes"
 Have read					   =	      306 codes from file "animal.codes"
 Max. number of levels for "animal" set to	   =	      306
**************************** Count of "animal" types ****************************
 No. of non-genotyped animals			   =		3
 No. of genotyped animals in total		   =	      303
 Total no. of "animals" 			   =	      306

 No. of "subjects" in data			   =	      282
 No. of combinations of records 		   =		1
 No. of effect codes/ind. (maxnr)		   =		2
 nq,neqns,nnginv	   1	     308	 906  xx   22140.0000000000	       22140  2147483646
 build MME - data part complete 		   =	      282
 S1STEP: build MME - random effects part	   =	      324
  end of peds	      324
 S1STEP: build MME - 1st pass complete
 Total no. of equations in MME			   =	      308
 No. of non-zero off-diagonal elements (triangle)  =	      324
 S1STEP: sort linked list - 2nd pass complete
 ZHZ successfully allocated		      324.
 ZHZDDD successfully allocated		    91809.
  end of peds	      324
 S1STEP: build MME - 3rd pass complete
 No. of zero elements in ZHZ			   =	      324
 No. of "genotyped" animals			   =	      303
 No. of "dense" equations - genotyped animals	   =	      303
 ... divided into how many sub-blocks		   =		1
 ... non-zero elements (triangle)		   =  861.000	   1.86946
 Total no. of non-zero coefficients LHS (inc.diag) =  1190.00
 Pre-conditioning scheme selected		   = "imprssor "
 Dense Cholesky factorisation option		   = "dpotrf"
 Dense LHS multiplication option		   = "dsymv "
 Sparse LHS multiplication option		   = "dsymv "
 Maximum no. of iterates			   =	    50000
 Interval (iterates) to reset residuals 	   =	       75
 Convergence criterion: SS deviations		   = 0.100000E-13
 Convergence criterion: SS dev.s/SS sol.s	   = 0.100000E-11
 S1STEP: start preconditioner at -  cpu 	      0 system		 0 wmb		 0    0.960000E-02
 S1STEP: start PCG iterations at -  cpu 	      0 system		 0 wmb		 0
   PCG	  24	 1.72233	0.998195E-09	0.452850E-15	 1348.20      sys-time		     0.0
 Final SS(solutions)				   =  1348.20
 Final SS(deviations)				   = 0.452850E-15
 Final SS(dev)/SS(sol)				   = 0.335893E-18
 S1STEP: end PCG iterations at - cpu		  0 system	     0
						 0 system	    0 min
 wtime						   = 0.110000E-01 0.183333E-03 0.305556E-05
 since precond					   = 0.150000E-02 0.250000E-04
	 no. of iterates carried out		   =	       24 imprssor
 No. of OMP threads used			   =		8
 Time for setting up preconditioner		   =  0.00000	   0.00000
Example18/A: Simple univariate analysis; conv. criterion set to 1.d-12
   1  animal		       306  zero soln.s       0
 Total time used (secs): CPU =		 0  System =	       0
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


0.011u 0.022s 0:00.01 300.0%	0+0k 0+168io 0pf+0w

Script done on 2025-05-26 17:25:31+1000
