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Command used: wombat w_hinvg.par
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wombat w_hinvg.par
Script started on 2025-05-26 17:31:02+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

 Parameter file opened : "w_hinvg.par"
**RUNOP --hinv -v**
**COM Example20/A1: Calculate H^{-1} scaling G towards A22**
**PED ../InputFiles/peds.dat**
  Pedigree file : "../InputFiles/peds.dat"
**MRK ../InputFiles/MarkerCounts.dat**
  Marker counts file : "../InputFiles/MarkerCounts.dat"
**SPECIAL**
**HINVERSE SNP 3000**
  HINV: nsnp, msnp	   3000        3000
 HACK_NUMBER NSNPS
**HINVERSE scaleG**
**HINVERSE OUT GIN animal**
  HINV: how_houtput GIN
 animal.gin
**END**

 End of parameter file reached :   9 lines read
 Colleau's method specified for calculation of A22 - but not needed
 "In core" storage for NRM Inverse switched on
 ***Time: begin idvec			      0 	  0 Used since last	    0.0 	0.0
 ***Time: end idvec			      0 	  0 Used since last	    0.0 	0.0
 Pedigree file					   = ../InputFiles/peds.dat
 Total no. of animal IDs found			   =	      750
 no. of NRM matrices		1	    1
**************************** Count of "animal" types ****************************
 No. of non-genotyped animals			   =	      380
 No. of genotyped animals in total		   =	      370
 Total no. of "animals" 			   =	      750

 Begin: read M2 from ../InputFiles/MarkerCount sys-time 	    0.0 	    0.0
 tvec4	      3000
 chevck marks	     3000	 3000
 No. of rows in ../InputFiles/MarkerCounts.dat read=	      370
 No. of marker allele counts per row read	   =	     3000
 End: read M2 from .dat 		       sys-time 	    0.3 	    0.3
 Successfully allocated arrays for in-core NRM

 Inbreeding coefficients for random effect	   =		1 computed
 ... TIER's algorithm
 Covariance structure				   =	NRM
 No. of inbred animals				   =	       73
 Average inbreeding coefficient 		   = 0.269792	  (in %)
 ... amongst inbred animals			   =  2.77183	  (in %)

 NRM Inverse no. :	     1	 "X"
 No. of elements =	  2545	 log determinant =  -417.061508887861
 A22: No. genotyped animals + ancestors 	   =	      624
 End: calculating A22 (Colleau) 	       sys-time 	    0.4 	    0.4
 End: centering M2			       sys-time 	    0.4 	    0.4
 End: calculating GRM			       sys-time 	    0.4 	    0.4
 end calc g22 F
 F
 End: inverting g22			       sys-time 	    0.4 	    0.4
 End: inverting a22			       sys-time 	    0.4 	    0.4
 Start writing out "animal.gin"
 H^{-1} : No. of non-zero elements in A^11, A^21   =	   70394.000
 Total time used (secs): CPU =		 1  System =	       0
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


1.715u 0.188s 0:00.57 331.5%	0+0k 0+6880io 0pf+0w

Script done on 2025-05-26 17:31:02+1000
