WOMBAT Example 21

Illustrates additional single step BLUP modules

Simulated data for two traits recorded on 600 animals;
use marker allele counts for 1000 SNP  for about a third of animals 

A: SS-BLUP using run option --s1step
   This requires matrix H^{-1} as *.gin file which is not included
   (large); instead an additional *.par file is provided to set 
   this up using run option --hinv

A1: as A, but using run option --hdiag to obtain the diagonal elements
   of H (optional step 2) and --blup to obtain direct solutions with
   standard  errors. If the file with diagonal elements of H is found,
   corresponding accuracies are calculated.

B: SS-BLUP using run option --s2step (iteration on data)
   This requires the "add-on" in H^{-1} (to A^{-1}) in binary form - 
   this file is not included, but a *.par file is provided to compute 
   it using run option --hinv


