======================================================
Command used: wombat hinv.par
======================================================

wombat hinv.par
Script started on 2025-05-26 17:31:16+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

 HACK_NUMBER NSNPS
 animal.gin
 Colleau's method specified for calculation of A22 - but not needed
 "In core" storage for NRM Inverse switched on
 Pedigree file					   = ../peds2.dat
 Total no. of animal IDs found			   =	      130
**************************** Count of "animal" types ****************************
 No. of non-genotyped animals			   =	       26
 No. of genotyped animals in total		   =	      104
 Total no. of "animals" 			   =	      130

 Begin: read M2 from ../MarkerCounts2.dat      sys-time 	    0.0 	    0.0
 tvec4	       100
 chevck marks	      100	  100
 No. of rows in ../MarkerCounts2.dat read	   =	      104
 No. of marker allele counts per row read	   =	      100
 End: read M2 from .dat 		       sys-time 	    0.0 	    0.0
 Successfully allocated arrays for in-core NRM
 A22: No. genotyped animals + ancestors 	   =	      116
 End: calculating A22 (Colleau) 	       sys-time 	    0.1 	    0.1
 End: centering M2			       sys-time 	    0.1 	    0.1
 End: calculating GRM			       sys-time 	    0.1 	    0.1
 end calc g22 F
 F
 End: inverting g22			       sys-time 	    0.1 	    0.1
 File "GRMInv.dat" written out:        5460  non-zero elements (halfstored)
 End: inverting a22			       sys-time 	    0.1 	    0.1
 Start writing out "animal.gin"
 H^{-1} : No. of non-zero elements in A^11, A^21   =	   5570.0000
	 0.00000		  alpha 	  0.00000
 Total time used (secs): CPU =		 0  System =	       0
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


0.294u 0.090s 0:00.13 292.3%	0+0k 0+1392io 0pf+0w

Script done on 2025-05-26 17:31:16+1000
======================================================
Command used: wombat s1blup.par
======================================================

wombat s1blup.par
Script started on 2025-05-26 17:31:16+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

	  50	      50 0   1.00000
 File						   = "animal.gin"
 No. of records 				   =	     5570
 Denseness of matrix				   =  65.4140	 %
 No. of diagonal elements found 		   =	      130
 No. of zero elements found			   =		0
 No. of elements close to zero			   =		0    0.00%
 Log determinant given				   =  0.00000
 Have read					   =	      130 codes from file "animal.codes"
 Max. number of levels for "animal" set to	   =	      130
 No. of "subjects" in data			   =	      130
 No. of combinations of records 		   =		1
 No. of effect codes/ind. (maxnr)		   =		2
 adjact ivcol	   178074      178074
 Start of "GENMMD": no. of rows 		   =	      131
 End of "GENMMD": no of subscripts		   =	      462
 adjact ivcol	   178074      178074
 End of "SMBFCT": maxsub			   =	      253	   132
		  maxlnz			   =	     5713
		  nnops 			   =  204882.	  0.100000E+16
 "Super-nodes" :  No. of nodes			   =	       27
		  Max. size			   =	      106
 BSOLVE-SNP: value for "beta" set to		   =  1.00000
	     value for "lambda" set to		   =  1.00000
	     denominator used in calculating G	   =  45.9425
	     method used to calculate G set to	   = VRADEN1
	     --> resulting scale factor used	   = 0.217663E-01
	     form of G inverse assumed to be	   = FULLINV
	     number of markers used		   =	      100
 Begin: read M2 from ../MarkerCounts2.dat      sys-time 	    0.1 	    0.1
 tvec4	       100
 chevck marks	      100	  100
 No. of rows in ../MarkerCounts2.dat read	   =	      104
 No. of marker allele counts per row read	   =	      100
 End: read M2 from .dat 		       sys-time 	    0.1 	    0.1
 Marker counts have been centered using observed p
 end centering M2  sys-time		  0.1		    0.1
 End ssGWAS   sys-time		     0.1
   1  animal		       130  zero soln.s       0
 SS residuals	618.738
 Total time used (secs): CPU =		 0  System =	       0
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


0.133u 0.046s 0:00.09 188.8%	0+0k 0+264io 0pf+0w

Script done on 2025-05-26 17:31:16+1000
