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Command used: wombat imprint.par
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wombat imprint.par
Script started on 2025-05-26 16:47:49+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

 Routine "REDUCEPEDS" to eliminate animals not connected to the data
 -> this may not account properly for genotyped animals & their ancestors
    do not use this routine if you have such information - perform equivalent
    calculations yourself prior to running WOMBAT & use run option --norped
 Found redundant animals in pedigree -- new file "ReducedPedFile.dat"
 Total no. of IDs in pedigree file		   =	     5166
 ... no. of IDs "linked" to data		   =	     5117
 Pedigree file					   = ReducedPedFile.dat
 Total no. of animal IDs found			   =	     5117
 File						   = "imprint.gin"
 No. of records 				   =	    25782
 Denseness of matrix				   = 0.707930E-01%
 No. of diagonal elements found 		   =	     8534
 No. of zero elements found			   =		0
 No. of elements close to zero			   =		0    0.00%
 Log determinant given				   = -5166.20
 ***** Found more levels of RE in GIN^{-1} than in data
       No. of levels found in data		   =	     2335
       Max. row/column no. in GIN^{-1}		   =	     8534
 Covariance structure				   =	NRM
 No. of inbred animals				   =	     1982
 Average inbreeding coefficient 		   = 0.888209	  (in %)
 Have read					   =	     8534 codes from file "imprint.codes"
 Max. number of levels for "imprint" set to	   =	     8534
 No. of "subjects" in data			   =	     2335
 No. of combinations of records 		   =		1
 No. of effect codes/ind. (maxnr)		   =		5
 adjact ivcol	  8373636     8373636
 Start of "GENMMD": no. of rows 		   =	    12865
 genmmd        5000	   6155 	  6
 genmmd       10000	   8932 	 15
 End of "GENMMD": no of subscripts		   =	   214531
 adjact ivcol	  8373636     8373636
 End of "SMBFCT": maxsub			   =	   140515	 12866
		  maxlnz			   =	   410196
		  nnops 			   = 0.672460E+08 0.100000E+16
 REML analysis has few parameters to be estimated
  --> switching to AI-REML w/out preliminary EM steps
 "Super-nodes" :  No. of nodes			   =	    11712
		  Max. size			   =	      656
 *** AI iterate     0  log L =	-3171.03567	 D =   0.0000	    0.0000	Time	    2	     1
 *** AI iterate     1  log L =	-3167.91575	 D =   3.1199	   0.10896	Time	    2	     0
 *** AI iterate     2  log L =	-3167.90913	 D =  0.66154E-02  0.72384E-02	Time	    2	     0
 *** AI iterate     3  log L =	-3167.90912	 D =  0.63807E-05  0.27984E-03	Time	    2	     0
 *** AIREML seems to have converged: Change in log L <	0.500000E-03
     Last change in log L			   = 0.638066E-05
     Norm of gradient vector			   = 0.301045E-01 (should be close to 0)
     ... "Cholesky" scale			   = 0.156502E-01 (should be close to 0)
     Newton decrement				   =-0.575928E-05 (should be close to 0)
   1  animal		      4267  zero soln.s       0
   2  imprint		      8534  zero soln.s     761
 SS residuals	5201.70
 Eigenvalues of AI matrix
    787.645	   49.5408	  12.7490
 Total time used (secs): CPU =		11  System =	       2
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


11.318u 0.647s 0:02.28 524.1%	0+0k 0+7736io 0pf+0w

Script done on 2025-05-26 16:47:51+1000
