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Command used: wombat ww2.par
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wombat ww2.par
Script started on 2025-05-26 16:56:30+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

 Routine "REDUCEPEDS" to eliminate animals not connected to the data
 -> this may not account properly for genotyped animals & their ancestors
    do not use this routine if you have such information - perform equivalent
    calculations yourself prior to running WOMBAT & use run option --norped
 Found redundant animals in pedigree -- new file "ReducedPedFile.dat"
 Total no. of IDs in pedigree file		   =	     3777
 ... no. of IDs "linked" to data		   =	     3421
 Pedigree file					   = ReducedPedFile.dat
 Total no. of animal IDs found			   =	     3426
 No. of "subjects" in data			   =	     3088
 No. of combinations of records 		   =		1
 No. of effect codes/ind. (maxnr)		   =		6
 adjact ivcol	  5096052     5096052
 Start of "GENMMD": no. of rows 		   =	     8209
 genmmd        5000	   7992 	 13
 End of "GENMMD": no of subscripts		   =	   138948
 adjact ivcol	  5096052     5096052
 End of "SMBFCT": maxsub			   =	   112125	  8210
		  maxlnz			   =	   379319
		  nnops 			   = 0.634230E+08 0.100000E+16
 REML analysis has few parameters to be estimated
  --> switching to AI-REML w/out preliminary EM steps
 "Super-nodes" :  No. of nodes			   =	     6781
		  Max. size			   =	      689
 *** AI iterate     0  log L =	-10363.5773	 D =   0.0000	    0.0000	Time	    2	     1
 *** AI iterate     1  log L =	-10314.7655	 D =   48.812	   0.32490	Time	    1	     0
 *** AI iterate     2  log L =	-10313.5370	 D =   1.2285	   0.44625E-01	Time	    1	     0
 *** AI iterate     3  log L =	-10313.5344	 D =  0.25969E-02  0.31962E-02	Time	    1	     0
 *** AI iterate     4  log L =	-10313.5344	 D =  0.31937E-04  0.48209E-03	Time	    1	     0
 *** AIREML seems to have converged: Change in log L <	0.500000E-03
     Last change in log L			   = 0.319368E-04
     Norm of gradient vector			   = 0.730892E-02 (should be close to 0)
     ... "Cholesky" scale			   = 0.386700E-03 (should be close to 0)
     Newton decrement				   =-0.272499E-04 (should be close to 0)
   1  animal+gmdam	      6852  zero soln.s       1
   2  pedam		       956  zero soln.s       0
 SS residuals	557422.
 Eigenvalues of AI matrix
    8.68373	   2.05706	 0.522298	0.267481       0.178567
 Total time used (secs): CPU =		11  System =	       2
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


10.583u 0.731s 0:02.16 523.6%	0+0k 0+6912io 0pf+0w

Script done on 2025-05-26 16:56:32+1000
