======================================================
Command used: wombat wombat.par
======================================================

wombat wombat.par
Script started on 2025-05-26 17:06:31+1000
 WOMBAT 26-05-2025 Maximum no. of threads to be used set to	      8

 WARNING : You have chosen to fit a regression on a spline function
 for a "nested" covariable - there is a chance for dependencies
 among fixed effects that are not properly accounted for.
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 WARNING : You have chosen to fit a regression on a spline function
 for a "nested" covariable - there is a chance for dependencies
 among fixed effects that are not properly accounted for.
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 WARNING : You have chosen to fit a regression on a spline function
 for a "nested" covariable - there is a chance for dependencies
 among fixed effects that are not properly accounted for.
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 Routine "REDUCEPEDS" to eliminate animals not connected to the data
 -> this may not account properly for genotyped animals & their ancestors
    do not use this routine if you have such information - perform equivalent
    calculations yourself prior to running WOMBAT & use run option --norped
 Found redundant animals in pedigree -- new file "ReducedPedFile.dat"
 Total no. of IDs in pedigree file		   =	     4553
 ... no. of IDs "linked" to data		   =	     4511
 Pedigree file					   = ReducedPedFile.dat
 Total no. of animal IDs found			   =	     4511
 RR bspknot  -138.500	   -68.7500	  1.00000	70.7500       140.500	    210.250	  280.000	349.750
	      419.500
 FX bspknot  -110.600	   -54.8000	  1.00000	56.8000       112.600	    168.400	  224.200	280.000
	      335.800	    391.600
 FX bspknot  -110.600	   -54.8000	  1.00000	56.8000       112.600	    168.400	  224.200	280.000
	      335.800	    391.600
 FX bspknot  -110.600	   -54.8000	  1.00000	56.8000       112.600	    168.400	  224.200	280.000
	      335.800	    391.600
 No. of "subjects" in data			   =	     3768
 No. of combinations of records 		   =		1
 No. of effect codes/ind. (maxnr)		   =	       27
 LSQFix 	      1000000	    184000000  at row	    894      2300
 LSQFix 	      2000000	    184000000  at row	    888      2300
 LSQ : additional dependency	      31   pivot  1.455191522836685E-011
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	      32   pivot -2.937738941000170E-011
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	      33   pivot -4.244071760695176E-011
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	      34   pivot -5.048406137575532E-012
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	      35   pivot -5.449862783280557E-012
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	      36   pivot -5.079964227050482E-014
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	     103   pivot  8.541278795329777E-012
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	     104   pivot  1.128253046543373E-011
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	     105   pivot  7.405853708027411E-012
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	     106   pivot  6.483480418216334E-012
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	     107   pivot  3.961442282833498E-012
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 LSQ : additional dependency	     108   pivot -8.107018745553973E-014
     Rows/columns to be zero-ed out to account for the
     additional dependency among fixed effects found
     corresponds to a (nested ?) regression coefficient !
     This may cause problems - it would be highly advisable to
     identify the level(s) of fixed effects fitted which
     cause this & specify these explicitely (in the .par file)
     as to be zero-ed out instead !!!
 *** WOMBAT is work in progress !
     The particular combination of features selected has not
     been fully tested/fault trapped and/or may cause
     problems - Proceed with CAUTION !
 adjact ivcol	 34406982    34406982
 DAdjac 	      1000000	     34406982  at row	  56580     57490
 Start of "AMD": no. of rows			   =	    57488
 End of "AMD": no of subscripts 		   =	  3345617
 adjact ivcol	 34406982    34406982
 End of "SMBFCT": maxsub			   =	   873228	 57489
		  maxlnz			   =	  9062043
		  nnops 			   = 0.766167E+10 0.100000E+16
 "Super-nodes" :  No. of nodes			   =	    20154
		  Max. size			   =	     3461
 *** EM round	    0  log L =	-49048.1034	 D =   0.0000	    0.0000	Time	   22	    14
 *** EM round	    1  log L =	-48982.5726	 D =   65.531	   0.51075E-01	Time	   31	     7
 *** EM round	    2  log L =	-48939.1681	 D =   43.404	   0.38006E-01	Time	   31	     6
 *** EM round	    3  log L =	-48908.4886	 D =   30.680	   0.29491E-01	Time	   31	     7
 *** AI iterate     4  log L =	-48821.8047	 D =   86.684	   0.28474	Time	   65	    11
 *** AI iterate     5  log L =	-48748.7220	 D =   73.083	   0.14160	Time	   55	     8
 *** AI iterate     6  log L =	-48727.5720	 D =   21.150	   0.88600E-01	Time	   54	     8
 *** AI iterate     7  log L =	-48724.8944	 D =   2.6776	   0.29439E-01	Time	   55	     8
 *** AI iterate     8  log L =	-48724.6515	 D =  0.24287	   0.14492E-01	Time	   54	     8
 *** AI iterate     9  log L =	-48724.5966	 D =  0.54907E-01  0.60973E-02	Time	   54	     8
 *** AI iterate    10  log L =	-48724.5930	 D =  0.36460E-02  0.31813E-02	Time	   54	     8
 *** AI iterate    11  log L =	-48724.5927	 D =  0.27754E-03  0.21692E-02	Time	   54	     8
 *** AIREML seems to have converged: Change in log L <	0.500000E-03
     Last change in log L			   = 0.277540E-03
     Norm of gradient vector			   = 0.230009	  (should be close to 0)
     ... "Cholesky" scale			   = 0.210421	  (should be close to 0)
     Newton decrement				   =-0.239592E-03 (should be close to 0)
 Forcing calculation of standard errors for solutions
 Rebuild L: time for factorization =  0.000000000000000E+000  secs
 Coefficient matrix inverted: Time =   2.34680000000000       secs
   1  animal		     23754  zero soln.s       0
   2  subject		     22608  zero soln.s       0
   3  pdam		      8838  zero soln.s       0
 SS residuals	65296.5
 Eigenvalues of AI matrix
    2388.17	   1783.92	  1458.41	 1363.13	1311.82        1118.19	      989.592	     937.159
    762.882	   711.165	  702.032	 528.216	470.553        283.474	      174.877	     147.704
    100.479	   87.2177	  77.2724	 71.9271	65.5780        47.8724	      44.4050	     32.1603
    28.8120	   24.7343	  24.3791	 24.1112	16.3461        14.0635	      13.4748	     12.5365
    11.9629	   11.5783	  9.09790	 8.76592	7.70050        7.00713	      5.63303	     5.08796
    4.80879	   4.61736	  4.19195	 3.97492	3.80251        3.27154	      3.14325	     2.98650
    2.58256	   2.42388	  2.41172	 1.98590	1.85678        1.35991	      1.31715	     1.03237
   0.956065	  0.852870	 0.778163	0.739024       0.628082       0.576730	     0.386658	    0.295338
   0.287314	  0.211272	 0.177301	0.168989       0.136229       0.408489E-01   0.244852E-01   0.911884E-03
   0.194320E-05
 Total time used (secs): CPU =	       587  System =	     113
 Machine used = "didgeridoo"
 "WOMBAT" has finished !  26/05/2025


565.266u 22.092s 1:53.56 517.2% 0+0k 0+73840io 0pf+0w

Script done on 2025-05-26 17:08:25+1000
