====== Worked Examples ======

Use of WOMBAT is illustrated by a suite of worked examples. The complete set of examples 1 to 16 (Linux version; gzipped tar ball) can be downloaded  [[http://didgeridoo.une.edu.au/km/WOMBAT/examples.tar.gz |here]]. 

There are a total of 11 example data sets with a number of different analyses shown for most of them to illustrate different models and options available.

^  Link   ^ Traits ^ Description ^ 
| [[Ex1Page|Example1]]|   1| Univariate analysis fitting simple animal model; single fixed effect | 
| [[Ex2Page|Example2]]|  2| Bivariate analysis fitting additional random effect; multiple fixed effects| 
| [[Ex3Page|Example3]]|  1| Simple random regression analysis; compare to repeatability model| 
| [[Ex4Page|Example4]]|  4| Multivariate analyses fitting a simple animal model; multiple fixed effects & covariables| 
| [[Ex5Page|Example5]]|  6| Multivariate analyses fitting a simple animal model; demonstrate reduced rank & FA options| 
| [[Ex6Page|Example6]]|  8| Multivariate analyses fitting a simple animal model; traits measured on distinct subsets of animals| 
| [[Ex7Page|Example7]]|  4| Uni- and multivariate analyses for models including maternal effects; includes analyses estimating direct-maternal covariances or fitting maternal effects for subsets of traits only| 
| [[Ex8Page|Example8]]|  2| Bivariate analysis with different random effects for different traits| 
| [[Ex9Page|Example9]]|  1| Random regression analyses including maternal effects fitting B-splines; full & reduced rank fit| 
| [[Ex10Page|Example10]]|  2| The Gryphon example of Wilson et al 2010|
| [[Ex11Page|Example11]]|  2| Bivariate random regression analysis for simulated data |
| [[Ex13Page|Example13]]|  4| Multivariate analyses with different numbers of repeated records for different traits; simulated data |
| [[Ex14Page|Example14]]|  1| `Automatic' GWAS analysis; toy example |
| [[Ex15Page|Example15]]|  14| Pooling results from part analyses|
| [[Ex16Page|Example16]]|  1| Fitting a `social interaction' model|
| [[Ex17Page|Example17]]|  1| Sampling based approximation of sampling errors|
| [[Ex18Page|Example18]]|  1,2| Single step prediction|
| [[Ex19Page|Example19]]|  6 | Penalized REML using simple penalties|
| [[Ex20Page|Example20]]|  NA | Calculate genomic relationship matrices|
| [[Ex21Page|Example21]]|  2| Single step prediction - Hybrid model|