−−blupruntime option, WOMBAT calculates the inverse of the coefficient matrix in the mixed model equations to obtain solutions for all fixed and random effects fitted, and provides corresponding standard errors, obtained from the diagonal elements of the inverse coefficient matrix.
wombat −c −−emalg1.
SumEstimates.out, i.e. you may wish to rename your results file before this additional run.
−c −−blupfor this purpose; note though that
−−blupswitches off pruning of pedigrees, i.e. that this may cause WOMBAT to recalculate inbreeding coefficients and the inverse of the numerator relationship matrix.
SPECIALblock at the end of the parameter file. For cases where standard errors are not obtained automatically, this will force WOMBAT to invert the coefficient matrix at the end of the analysis and report standard errors, for both fixed and random effects fitted. NB: This can be rather time consuming!
SPECIAL FORCE-SE END
−−mmeoutwhich acts like
−−solvitbut writes out the complete mixed model equations (non-zero elements of one triangle of the coefficient matrix only) to file (there is no equivalent for