WOMBAT – A program for Mixed Model Analyses by Restricted Maximum Likelihood

Some publications citing or using WOMBAT

<bibtex>

@Article{piper2007,

author =	 {Piper, L.R. and Swan, A. A. and H. G. Brewer},
title =	 {Is increased fleece weight associated with reduced
                reproduction rate? Results from long term
                multi-trait selection flocks},
journal =	 {Proc. Assoc. Advmt. Anim. Breed. Genet.},
year =	 2007,
volume =	 17,
pages =	 {103--106}

}

@article{szwaczkowski2007gvb,

title={Genetic variability of body weight in two goose strains under long-term selection.},
author={Szwaczkowski, T. and Wezyk, S. and Stanislawska-Barczak, E. and Badowski, J. and Bielinska, H. and Wolc, A.},
journal={Journal of Applied Genetics},
volume={48},
number={3},
pages={253--260},
year={2007},
publisher={J Appl Genet}

}

@article{postma2007amc,

title =	 {What 'animal models' and cannot tell ornithologists
                about the genetics of wild populations},
author =	 {Postma, E. and Charmantier, A.},
journal =	 {J. Ornithology},
volume =	 148,
pages =	 {633--642},
year =	 2007,

}

@article{crews2007ima,

title={Illustration of the maternal animal model used for genetic evaluation of beef cattle},
author={Crews, D.H. and Wang, Z.},
journal={J. Anim. Sci.},

volume={85},

number={7},
pages={1842--1848},
year = 2007,

}

@ARTICLE{johnstonnew,

  author = {Johnston, D. J. and Graser, H.-U. and Tier, B.},
   title = {{New Developments in Beef Cattle Genetic Evaluation in Australia}},
 journal = {Interbull Bulletin},
  volume = {37},
    year = {2007},
   pages = {9--11}

}

@article{chenoweth2008qmg,

title =	 {QST meets the G matrix: the dimensionality of
                adaptive divergence in multiple correlated
                quantitative traits},
author =	 {Chenoweth, S.F. and Blows, M.W.},
journal =	 {Evolution},
year =	 2008,
volume = 62,
number = 6,
pages = 1437--1439,

}

@article{xx2008, title ={Genetic relationship of gestation length with birth and weaning weight in Hanwoo (Bos Taurus Coreanae)}, author ={Hwang, J.M. and Choi, J.G. and Kim, H.C. and Choy, Y.H. and Kim, S. and Lee, C. and Kim, J.B.}, year = 2008, volume=21, pages ={633}, journal = {Asian - Austral. J. Anim. Sci.}, }

@ARTICLE{womn,

  author = {Antonini, A. G. and Corva, S. G. and Oyarzabal, M. I.},
   title = {Seleccion por tamano de camada en conejos para carne},
 journal = {BAG. Journal of Basic and Applied Genetics},
  volume = {19},
    year = {2008},
   pages = {01--07},
    issn = {1852-6233}

} @article{yy2008, title = {Heritability estimates and correlations between production and reproductive traits in Lori-Bakhtiari sheep in Iran}, author ={Vatankhah, M. and M.A. Talebi}, year = 2008, journal ={South Afric. J. Anim. Sci.}, volume = 38, number =2, pages = 110–118, }

@PHDTHESIS{knight2008improved,

  author = {Knight, E.},
   title = {Improved iterative schemes for REML estimation of variance parameters in linear mixed models},
    year = {2008},
  address = {University of Adelaide}

}

</bibtex>

2009

<bibtex> @Article{gil2009,

author =	 {Jeyaruban, M.G.  and Johnston, D.J.  and Graser,
                H.-U.},
title =	 {Estimation of genotype x environment interactions
                for growth, fatness and reproductive traits in
                Australian Angus cattle},
journal =	 {Anim. Prod. Sci.},
year =	 2009,
volume =	 49,
number =	 1,
pages =	 {1--8},
url =		 {http://dx.doi.org/10.1071/EA08098 }

}

@article{kirkpatrick:pqg,

title =	 {Patterns of quantitative genetic variation in
                multiple dimensions},
author =	 {Kirkpatrick, M.},
journal =	 {Genetica},
volume ={136},
pages =	 {271--284},
year =	 {2009},
url={http://dx.doi.org/10.1007/s10709-008-9302-6}

}

@article{xx2, title ={Genetic parameters for faecal egg count, packed-cell volume and body-weight in Santa Inês lambs}, author ={R. N.B. Lôbo and L. S. Vieira and A. A. de Oliveira and E. N. Muniz and J. M. da Silva}, year = 2009, journal ={Genetics and Molecular Biology}, volume= 32, pages = 228–294, number = 2, url={http://dx.doi.org/10.1590/S1415-47572009005000032} }

@article{boligon2009multi,

title={Multi-trait and random regression mature weight heritability and breeding value estimates in Nelore cattle},
author={Boligon, A A and Mercadante, M E Z and Baldi, F. and Lobo, R B and Albuquerque, L G},
journal={South African Journal of Animal Science},
volume={39},
pages={145--148},
number ={Supplement 1},
year={2009}

}

@article{vald09, title={Mapping in structured populations by resample model averaging}, year=2009, author ={W. Valdar and C. C. Holmes R. Mott and J. Flint}, journal ={Genetics}, pages ={1263-1277}, volume ={182}, url={http://dx.doi.org/10.1534/genetics.109.100727 } }

@article{shk09, title={Genetic evaluation and calculating daughter yield deviation of bulls in Iranian Holstein cattle for milk and fat yields}, year=2009, author={M. Sheikhloo and J. Shodja and N. Pirany and S. Alijani and M.B. Sayadnejad}, journal={Asian - Australasian Journal of Animal Sciences}, volume={22}, pages={611}, }

@article{mcgl09, title={How to Measure Indirect Genetic Effects: The Congruence of Trait-Based and Variance-Partitioning Approaches}, year={2009}, journal={Evolution}, author={McGlothlin, J.W. and Brodie, E. D. III}, volume={63}, pages={1785-1795}, url={http://dx.doi.org/10.1111/j.1558-5646.2009.00676.x} }

@article{xxx, title={Genetic parameters for post weaning growth of Nellore cattle using polinomyals and trigonometric functions in random regression models}, year={2009}, journal={Scientia Agricola}, author={Macedo, O. J. and Barbin, D. and Mourão, G. B.}, volume={66}, number={4}, pages={522–528}, url={http://dx.doi.org/10.1590/S0103-90162009000400014 }, }

@ARTICLE{lobo2009b,

  author = {Lobo, A. M. B. O. and Lobo, R. N. B. and Paiva, S. R. and Oliveira, S. M. P. de and Faco, O.},
   title = {Genetic parameters for growth, reproductive and maternal traits in a multibreed meat sheep population},
 journal = {Genetics and Molecular Biology},
    year = {2009},
    volume={32},
    pages={761--770},
     url = {http://dx.doi.org/10.1590/S1415-47572009005000080},

}

@article{eroukhmanoff2009rapid,

title={Rapid adaptive divergence between ecotypes of an aquatic isopod inferred from F ST-Q ST analysis},
author={Eroukhmanoff, F. and Hargeby, A. and Svensson, E.I.},
journal={Molecular Ecology},
volume={18},
number={23},
year={2009},
pages={4912--4923},

url={http://dx.doi.org/10.1111/j.1365-294X.2009.04408.x}, }

@article{zhang2009software,

title={Software engineering the mixed model for genome-wide association studies on large samples},
author={Zhang, Z. and Buckler, E.S. and Casstevens, T.M. and Bradbury, P.J.},
journal={Briefings in Bioinformatics},
volume={10},
number={6},
pages={664--675},
year={2009},
publisher={Oxford Univ Press},
url={http://dx.doi.org/10.1093/bib/bbp050}

}

@article{maenhout2009,

title={CoCoa: a software tool for estimating the coefficient of coancestry from multilocus genotype data},
author={Maenhout, S. and De Baets, B. and Haesaert, G.},
journal={Bioinformatics},
volume={25},
number={20},
pages={2753--2754},
year={2009},

} @ARTICLE{coombs2010,

  author = {Coombs, J. A. and Letcher, B. H. and Nislow, K. H.},
   title = {pedagog: software for simulating eco-evolutionary population dynamics},
 journal = {Molecular Ecology Resources},
  volume = {10},
  number ={3},
  pages={558--563},
    year = {2009},
     url = {http://dx.doi.org/10.1111/j.1755-0998.2009.02803.x}

}

@ARTICLE{mitchell2009thermal,

  author = {Mitchell, K. A. and Hoffmann, A. A.},
   title = {Thermal ramping rate influences evolutionary potential and species differences for upper thermal limits in Drosophila},
 journal = {Functional Ecology},
  volume = {24},
  number = {3},
  pages={694--700},
    year = {2009},
    url={http://dx.doi.org/10.1111/j.1365-2435.2009.01666.x}

}

@ARTICLE{mccairns2009adaptive,

   author = {McCairns, R. J. S. and Bernatchez, L.},
    title = {Adaptive divergence between freshwater and marine sticklebacks: Insights into the role of phenotypic plasticity from an integrated analysis of candidate gene expression},
  journal = {Evolution},
   volume = {64},
   number = {4},
    pages={1029--1047},
     year = {2009},
      url= {http://dx.doi.org/10.1111/j.1558-5646.2009.00886.x}

} </bibtex>

2010

<bibtex>

@article{blom09, title={Heritability of individual fitness in female macaques}, year=2010, volume={24}, pages={657–669},author={G. E. Blomquist}, journal={Evolutionary Ecology}, url={http://dx.doi.org/10.1007/s10682-009-9323-3}, }

@article{W.M. Snelling12042009, author = {Snelling, W. M. and Allan, M. F. and Keele, J. W. and Kuehn, L. A. and McDaneld, T. and Smith, T. P. L. and Sonstegard, T. S. and Thallman, R. M. and Bennett, G. L.}, title = {Genome-wide association study of growth in crossbred beef cattle}, journal = {J. Anim Sci.}, volume = {88}, number = {}, pages = {837–848}, url = {http://dx.doi.org/10.2527/jas.2009-2257}, year = {2010}, }

@article{A.A. Boligon11062009, author = {Boligon, A. A. and Mercadante, M. E. Z. and Forni, S. and Lobo, R. B. and Albuquerque, L. G.}, title = {Covariance functions for weights from birth to maturity in Nellore cows}, journal = {J. Anim Sci.}, volume = {88}, number = {}, pages = {849–859}, url = {http://dx.doi.org/10.2527/jas.2008-1511}, year = {2010}, }

@ARTICLE{wilson2009,

  author = {Wilson, A. J. and Reale, D. and Clements, M. N. and Morrissey, M. M. and Postma, E. and Walling, C. A. and Kruuk, L. E. B. and Nussey, D. H.},
   title = {An ecologist's guide to the animal model},
 journal = {Journal of Animal Ecology},
  volume = {79},
    year = {2010},
   pages = {13--26},
     url = {http://dx.doi.org/10.1111/j.1365-2656.2009.01639.x}

}

@article{dob09, title ={Response to selection and realized heritability of sperm length in the yellow dung fly (Scathophaga stercoraria) }, author ={Dobler, R. and Hosken, D. J. }, year =2010, journal ={Heredity}, volume ={104}, pages ={61–66}, url={http://dx.doi.or/10.1038/hdy.2009.93} }

@ARTICLE{paez2010,

  author = {Paez, D. J. and Morrissey, M. B. and Bernatchez, L. and Dodson, J. J.},
   title = {The genetic basis of early-life morphological traits and their relation to alternative male reproductive tactics in Atlantic salmon},
 journal = {Evolutionary Biology},
    year = {2010},
   volume = {23},
   number ={4},
   pages ={757--768},
     url = {http://dx.doi.org/10.1111/j.1420-9101.2010.01941.x}

}

@article{rabbits2010, author={Abou Khadiga,G. and Youssef, Y. M. K. and Saleh, K. and Nofal, R. Y. and Baselga, M.}, title ={Genetic trend in selection for litter weight in two maternal lines of rabbits in Egypt}, journal ={World Rabbit Science}, volume ={18}, pages ={27–32}, year={2010}, }

@article{A.A. Boligon04012010, author = {Boligon, A. A. and Silva, J. A. V. and Sesana, R. C. and Sesana, J. C. and Junqueira, J. B. and Albuquerque, L. G.}, title = {Estimation of genetic parameters for body weights, scrotal circumference, and testicular volume measured at different ages in Nellore cattle}, journal = {J. Anim. Sci.}, volume = {88}, number = {4}, pages = {1215–1219}, url = {http://dx.doi.org/10.2527/jas.2008-1719}, year = {2010}, }

@article{ghno2010, author = {Chenoweth, Stephen F. and Rundle, Howard D. and Blows, Mark W.}, title = {The Contribution of Selection and Genetic Constraints to Phenotypic Divergence.}, journal = {The American Naturalist}, volume = {175}, number = {2}, pages = {186-196}, year = {2010}, url = {http://dx.doi.org/10.1086/649594}, }

@article{trees, journal={Tree Genetics and Genomes}, title={Impact of reconstructed pedigrees on progeny-test breeding values in red spruce}, author={Doerksen, T. K. and Herbinger, C. M}, url={http://dx.doi.org/10.1007/s11295-010-0274-1}, volume={6}, number={4}, pages={591–600}, year={2010}, }

 @ARTICLE{kling2010,
  author = {Klingenberg, C.  P. and Debat, V. and Roff, D. A.},
   title = {Quantitative genetics of shape in cricket wings: Developmental integration in a functional structure},
 journal = {Evolution},
  volume = {64},
  pages ={2935--2951},
  number = {10},
    year = {2010},
     url = {http://dx.doi.org/10.1111/j.1558-5646.2010.01030.x}

}

 
 @article{oliveira2010genetic,
title={Genetic evaluation of partial growth trajectory of Santa In{\^e}s breed using random regression models},
author={Oliveira, K.A.P. and L{\^o}bo, R.N.B. and Fac{\'o}, O.},
journal={Revista Brasileira de Zootecnia},
volume={39},
pages={1029--1036},
year={2010},
url={http://dx.doi.org/10.1590/S1516-35982010000500013}

}

@article{Kariuki2010, title = “Genetic evaluation of growth of Dorper sheep in semi-arid Kenya using random regression models”, journal = “Small Ruminant Research”, volume = “93”, number = “2–3”, pages = “ 126-134 ”, year = “2010”, issn = “0921-4488”, url = “http://dx.doi.org/10.1016/j.smallrumres.2010.05.011”, author = “C.M. Kariuki and E.D. Ilatsia and C.B. Wasike and I.S. Kosgey and A.K. Kahi”, }

@ARTICLE{baldi2010,
  author = {Baldi, F. and Albuquerque, L. G. and Alencar, M. M.},
   title = {Random regression models on Legendre polynomials to estimate genetic parameters for weights from birth to adult age in Canchim cattle},
 journal = {Journal of Animal Breeding and Genetics},
  volume = {127},
  number = {4},
    year = {2010},
   pages = {289--299},
     url = {http://dx.doi.org/10.1111/j.1439-0388.2010.00853.x}

}

@article{Vatankhah2010, title = “Genetic and non-genetic factors affecting Lori-Bakhtiari ewe body weight and its relationship with productivity”, journal = “Small Ruminant Research”, volume = “94”, number = “”, pages = “98–102”, year = “2010”, doi= “DOI: 10.1016/j.smallrumres.2010.07.006”, url = “http://www.sciencedirect.com/science/article/B6TC5-50PB9NN-1/2/26b6f62336c02eb5090773e6be902211”, author = “M. Vatankhah and S.A. Salehi”,

}

@ARTICLE{Duffy20106,

  author = {Duffy, David L. and Iles, Mark M. and Glass, Dan and Zhu, Gu and Barrett, Jennifer H. and Hoiom, Veronica and Zhao, Zhen Z. and Sturm, Richard A. and Soranzo, Nicole and Hammond, Chris and Kvaskoff, Marina and Whiteman, David C. and Mangino, Massimo and Hansson, Johan and Newton-Bishop, Julia A. and Bataille, Veronique and Hayward, Nicholas K. and Martin, Nicholas G. and Bishop, D. Timothy and Spector, Timothy D. and Montgomery, Grant W.},
   title = {IRF4 Variants Have Age-Specific Effects on Nevus Count and Predispose to Melanoma},
 journal = {The American Journal of Human Genetics},
  volume = {87},
  number = {1},
    year = {2010},
   pages = {6 - 16},
     url = {http://dx.doi.org/10.1016/j.ajhg.2010.05.017}

}

   @article{cue2010,
   author = {Cue, R.},
    title = {Genetic correlations amongst body weight, fat yield, protein yield and body condition score in Ayrshire cows},
journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},
     year = {2010},
    pages = {111},
    url={http://www.kongressband.de/wcgalp2010/assets/pdf/0111.pdf}
    }
    
    @ARTICLE{xx11,
  author = {Verdal, H. de and Narcy, A. and Le Bihan-Duval, E. and Chapuis, H. and Bastianelli, D. and Meme, N. and Mignon-Grasteau, S.},
   title = {Selection for excretion traits in chickens},
   year ={2010},
  journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},   
   pages = {Paper 123},
   url=http://www.kongressband.de/wcgalp2010/assets/pdf/0123.pdf}
   

}

@ARTICLE{ssss,

  author = {M.A. Aziz and N.A. Shalaby and F.S. Al-Hur},
   title = {Comparison Between Genetic Parameters For Birth Weight Of Egyptian Buffaloes Estimated By Random Regression And Multi-Trait Models},
   journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},   
    year = {2010},
   pages = {Paper 175},
   url={http://www.kongressband.de/wcgalp2010/assets/pdf/0175.pdf}

}

@ARTICLE{sss,

  author = {Boligon, A. A. and Albuquerque, L. G.},
   title = {Random Regression Models For Scrotal Circumference In Nelore Cattle},
   journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},   
    year = {2010},
   pages = {Paper 222},
   url={http://www.kongressband.de/wcgalp2010/assets/pdf/0222.pdf}

}

@ARTICLE{aaa,

  author = {Saintilan, R. and Merour, I. and Schwob, S. and Sellier, P. and Bidanel, J. and Gilbert, H.},
   title = {Genetic Parameters And Halothane Genotype Effect For Residual Feed Intake In Pi{\'{e}}train Growing Pigs},
    journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},   
    year = {2010},
   pages = {Paper 400},
   url={http://www.kongressband.de/wcgalp2010/assets/pdf/0400.pdf}

}

@ARTICLE{paz-genetics,

  author = {Paz, C. C. P. and Buzanskas, M. E. and Moreira, H. L. and Zuin, R. G. and Savegnago, R. P. and Lobo, R. B. and Bezerra, L. A. F. and Munari, D. P.},
   title = {Genetics Associations Between Reproductive Traits In {N}elore Beef Cattle},

journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},

    year = {2010},
   pages = {paper 497},
  url={http://www.kongressband.de/wcgalp2010/assets/pdf/0497.pdf}

}

@ARTICLE{xzcz,

  author = {Ayres, D. R. and Baldi, F. and Bignardi, A. B. and Roso, V. M. and Albuquerque, L. G.},
   title = {Genetic Association Between Growth Traits And Tick Infestation In Nellore x Hereford Multibreed Cattle Population},

journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},

    year = {2010},
   pages = {Paper 614},
  url={http://www.kongressband.de/wcgalp2010/assets/pdf/0614.pdf}
  }

@ARTICLE{zxczc,

  author = {Guidolin, D. G. F. and Grupioni, N. V. and Chad, T. C. S. and Urbinati, I. and Paz, C. C. P. and Munari, D. P.},
   title = {Genetic Association For Growth, Reproductive And Carcass Traits In Guzer{\'{a}} Beef Cattle},

journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},

    year = {2010},
   pages = {Paper 640},
       url={http://www.kongressband.de/wcgalp2010/assets/pdf/0640.pdf}

}

@ARTICLE{nnxf,

  author = {Bignardi, A. B. and El Faro, L. and Rosa, G. J. M. and Silva, F. F. and Cardoso, V. L. and Albuquerque, L. G.},
   title = {Multivariate Analyses of First Lactation Test-day Milk Yield of Holstein Cattle Fitting Factor Analytic and Reduced Rank Models},
journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},   
    year = {2010},
   pages = {Paper 661},
       url={http://www.kongressband.de/wcgalp2010/assets/pdf/0661.pdf}

}

@ARTICLE{panetto-individual,

  author = {Panetto, J. C. C. and Gutierrez, J. P. and Ferraz, J. B. S. and Cunha, D. G. and Golden, B. L.},
   title = {{Individual Increases in Inbreeding on a highly inbred Guzerat Dairy Herd in Brazil}},

journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},

    year = {2010},
   pages = {Paper 775},
   url={http://www.kongressband.de/wcgalp2010/assets/pdf/0775.pdf}

}

@ARTICLE{baldi-study,

  author = {Baldi, F. and Pereira, M. C. and Roso, V. M. and Yokoo, M. J. and Schierholt, M. S. and Albuquerque, L. G.},
   title = {Study of Genotype by Environmental Interaction for weights of Nellore Cattle Using Reaction Norms},

journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},

    year = {2010},
   pages = {Paper 782},
       url={http://www.kongressband.de/wcgalp2010/assets/pdf/0782.pdf}

}

@ARTICLE{aaax,

  author = {Albuquerque, L. G. and Boligon, A. A. and Baldi, F. and Mercadante, M. E. Z. and Pereira, R. J. and Lobo, R. B.},
   title = {Breeding Values Accuracy For Growth Traits Using Random Regression And Multi-Trait Models In Nellore Cattle},

journal = {Proceedings 9th World Congress on Genetics Applied to Livestock Production},

    year = {2010},
   pages = {paper 784},
       url={http://www.kongressband.de/wcgalp2010/assets/pdf/0782.pdf}

}

@ARTICLE{tsiokos-genotype,

  author = {Tsiokos, D. and Chatziplis, D. and Ligda, C. and Georgoudis, A.},
   title = {{Genotype x Environment Interaction in the Greek Holstein Population}},
 journal = {Interbull Bulletin},
    year = {2010},
   pages = {296--298}

}

%Aigaion2 BibTeX export from Karin' Bibliography %Friday 15 October 2010 01:14:26 PM

@ARTICLE{panetto2010assessment,

   author = {Panetto, JCC and Guti{\'{e}}rrez, JP and Ferraz, JBS and Cunha, DG and Golden, BL},
    title = {Assessment of inbreeding depression in a Guzerat dairy herd: Effects of individual increase in inbreeding coefficients on production and reproduction},
  journal = {Journal of Dairy Science},
   volume = {93},
   number = {10},
     year = {2010},
    pages = {4902--4912},
    url={http://dx.doi.org/10.3168/jds.2010-3197}

}

  @ARTICLE{baldi2010bb,
  author = {Baldi, F. and Alencar, M. M. and Albuquerque, L. G.},
   title = {Random regression analyses using B-splines functions to model growth from birth to adult age in Canchim cattle},
 journal = {Journal of Animal Breeding and Genetics},
    year = {2010},
    volume ={127},
    pages ={433--441},
    issn = {1439-0388},
     url = {http://dx.doi.org/10.1111/j.1439-0388.2010.00873.x}

}

@ARTICLE{SOUSA JUNIOR2010,

  author = {Sousa, S. C. AND Oliveira, S. M. P. AND Albuquerque, L.G. and Boligon, A. A. and Filho, R. M.},
   month = {05},
   title = {Estimation of covariance functions for growth traits in Tabapu{\~{a}} cattle using random regression models},
 journal = {Revista Brasileira de Zootecnia},
  volume = {39},
    year = {2010},
   pages = {1037 - 1045},
     url = {http://dx.doi.org/10.1590/s1516-35982010000500014}

}

@INBOOK{postma2010using,

   author = {Postma, E.},
    title = {Using animal models to infer and predict the evolutionary consequences of climate change},
booktitle = {Effects of Climate Change on Birds},
     year = {2010},
    pages = {47--55},
publisher = {Oxford University Press}

}

</bibtex>

2011

<bibtex>

@ARTICLE{park2010principal,

   author = {Park, J. E. and Lee, J. R. and Oh, S. and Lee, J. W. and Oh, H. S. and Kim, H.},
    title = {Principal components analysis applied to genetic evaluation of racing performance of Thoroughbred race horses in Korea},
  journal = {Livestock Science},
  volume ={135},
  pages ={293-299},
     year = {2011},
       url = {http://dx.doi.org/10.1016/j.livsci.2010.07.014}

}

@article{di2011embryo,

title={Embryo Transfer Traits: Genetic Parameter Estimation},
author={di Croce, F.A. and Saxton, A. M. and Edwards, J. L. and Casanova, D. E. and Schrick, F.N.},
year={2011},
  journal ={Encyclopedia of Biotechnology in Agriculture and Food},
url={http://dx.doi.org/10.1081/E-EBAF-120045474},

}

@ARTICLE{klingenberg2011,

  author = {Klingenberg, C.  P.},
   title = {MorphoJ: An integrated software package for geometic morphometrics},
 journal = {Molecular Ecology Resources},
   volume = {11},
  number = {2},
    year = {2011},
   pages = {353--357},
     url = {http://dx.doi.org/10.1111/j.1755-0998.2010.02924.x}

}

@ARTICLE{Boligon2010x,

  author = {Boligon, A. A. and Baldi, F. and Albuquerque, L. G.},
   title = {Estimates of genetic parameters for scrotal circumference using random regression models in Nelore cattle},
 journal = {Livestock Science},
  volume = {137},
  number = {1--3},
    year = {2011},
   pages = {205--209 },
     url = {http://dx.doi.org/10.1016/j.livsci.2010.11.007}

}

@article{páez2010alternative,

title={{Alternative life histories in the Atlantic salmon: genetic covariances within the sneaker sexual tactic in males}},
author={P{\'a}ez, D.J. and Bernatchez, L. and Dodson, J.J.},
journal={Proceedings of the Royal Society B: Biological Sciences},
year={2011},
url={http://dx.doi.org/10.1098/rspb.2010.2045 }

}

@article{BALDI2011,

 title = {Effect of lactation length adjustment procedures on genetic parameter estimates for buffalo milk yield},
 journal = {Genetics and Molecular Biology},
 author={Baldi, Fernando AND Laureano, Monyka Marianna Massolini AND Gordo, Daniel Gustavo Mansan AND Bignardi, Annaiza Braga AND Borquis, Rusbel Raul Aspilcueta AND Albuquerque, Lucia Galv\~A\poundso de AND Tonhati, Humberto},
  volume = {34},
 year = {2011},
 pages = {62 - 67},
 url = {http://dx.doi.org/10.1590/S1415-47572011000100012},
 }    

@ARTICLE{JEB:JEB2159,

   author = {Paez, D. J. and Brisson-Bonenfant, C. and Rossignol, O. and Guderley, H. E. and Bernatchez, L. and Dodson, J. J.},
 keywords = {heritability, migration, salmon, size bimodality, smolt},
    title = {Alternative developmental pathways and the propensity to migrate: a case study in the Atlantic salmon},
  journal = {Journal of Evolutionary Biology},
   volume = {24},
   number = {2},
     year = {2011},
    pages = {245--255},
       url = {http://dx.doi.org/10.1111/j.1420-9101.2010.02159.x}

}

@ARTICLE{CambridgeJournals:8014828,

  author = {Gizaw, S. and Getachew, T. and Tibbo, M. and Haile, A. and Dessie, T.},
   title = {Congruence between selection on breeding values and farmers' selection criteria in sheep breeding under conventional nucleus breeding schemes},
 journal = {Animal},
  volume = {5},
  number = {},
    year = {2011},
   pages = {995--1001 },
     url = {http://dx.doi.org/10.1017/s1751731111000024}

}

@ARTICLE{REGATIERI2011,

  author = {Regatieri, I. C. and Boligon, A. A. and Albuquerque, L. G.},
   title = {Genetic analysis of visual scores and their relationships to mature female weight in Nellore breed},
 journal = {Revista Brasileira de Zootecnia},
  volume = {40},
    year = {2011},
   pages = {100 - 105},
     url = {http://dx.doi.org/10.1590/S1516-35982011000100014},

}

@ARTICLE{snelling2011partial,

  author = {Snelling, W. M. and Allan, M. F. and Keele, J. W. and Kuehn, L. A. and Thallman, R. M. and Bennett, G. L. and Ferrell, C. L. and Jenkins, T. G. and Freetly, H. C. and Nielsen, M. K.},
   title = {Partial-genome evaluation of postweaning feed intake and efficiency of crossbred beef cattle},
 journal = {Journal of Animal Science},
    year = {2011},
    volume={89},
    number={6},
   pages = {1731--1741 },
   url={http://dx.doi.org/10.2527/jas.2010-3526},

}

@ARTICLE{Zamani2011,

  author = {Zamani, P. and Miraei-Ashtiani, S. R. and Alipour, D. and Aliarabi, H. and Saki, A. A.},
   title = {Genetic parameters of protein efficiency and its relationships with yield traits in lactating dairy cows},
 journal = {Livestock Science},
  volume = {138},
  number = {1--3},
    year = {2011},
   pages = {272--277},
    note = {},
     url = {http://dx.doi.org/10.1016/j.livsci.2011.01.006}

}

@ARTICLE{hine2011natural,

  author = {Hine, E. and McGuigan, K. and Blows, M. W.},
   title = {Natural selection stops the evolution of male attractiveness},
 journal = {Proceedings of the National Academy of Sciences},
    pages ={3659--3664},
    volume={109},
    year = {2011},
    url = {http://dx.doi.org/10.1073/pnas.1011876108}

}

@ARTICLE{nnn,

  author = {Frank, B. M. and Piccolo, J. J. and Baret, P. V.},
keywords = {brown trout, demogenetics, ecological model, population dynamics, population genetics},
   title = {A review of ecological models for brown trout: towards a new demogenetic model},
 journal = {Ecology of Freshwater Fish},
    year = {2011},
    volume ={20},
    number ={2},
   pages = {167-–198},
     url = {http://dx.doi.org/10.1111/j.1600-0633.2011.00491.x}

}

@article {JEB:JEB2270, author = {Eroukhmanoff, F. and Svensson, E. I.}, title = {Evolution and stability of the G-matrix during the colonization of a novel environment}, journal = {Journal of Evolutionary Biology}, url = {http://dx.doi.org/10.1111/j.1420-9101.2011.02270.x}, doi = {10.1111/j.1420-9101.2011.02270.x}, volume ={24}, number={6}, pages = {1363–-1373}, keywords = {adaptation, ecotype, G-matrix, parallel evolution, rapid divergence}, year = {2011}, }

@ARTICLE{alpaca,

  author = {Paredes-Peralta, M. M. and Alonso-Moraga, A. and Analla, M. and Machaca-Centty, J. and Munoz-Serrano, A.},
   title = {Genetic parameters and fixed effects estimation for fibre traits in alpaca Huacaya (lama pacos)},
 journal = {Journal of Animal and Veterinary Advances},
  volume = {10},
  number = {11},
    year = {2011},
    url ={http://dx.doi.org/10.3923/javaa.2011.1484.1487},
   pages = {1484--1487}

}

@ARTICLE{mari2010a,

author =	 {Tyrisev{\"{a}}, A.-M. and Meyer, K. and Fikse,
                F. and Ducrocq, V. and Jakobsen, J. and Lidauer,
                M. H. and M{\"{a}}ntysaari, E. A.},
title =	 {Principal component approach in variance component
                estimation for international sire evaluation},
journal =	 {Genetics, Selection, Evolution},
volume =	 43,
year =	 2011,
pages =	 21,
url=		 {http://dx.doi.org/10.1186/1297-9686-43-21}

}

@article {EVO:EVO1314, author = {Postma, Erik and Spyrou, Nicolle and Rollins, Lee Ann and Brooks, Robert C.}, title = {SEX-DEPENDENT SELECTION DIFFERENTIALLY SHAPES GENETIC VARIATION ON AND OFF THE GUPPY Y CHROMOSOME}, journal = {Evolution}, url = {http://dx.doi.org/10.1111/j.1558-5646.2011.01314.x}, doi = {10.1111/j.1558-5646.2011.01314.x}, volume={65}, number={8}, pages = {2145–2156}, year = {2011}, }

@ARTICLE{Rolfe2011,

  author = {Rolfe, K. M. and Snelling, W. M. and Nielsen, M. K. and Freetly, H. C. and Ferrell, C. L. and Jenkins, T. G.},
   title = {Genetic and Phenotypic Parameter Estimates for Feed Intake and Other Traits in Growing Beef Cattle and Opportunities for Selection},
 journal = {Journal of Animal Science},
    year = {2011},
     url = {http://dx.doi.org/10.2527/jas.2011-3961},

}

@article{boligon2011breeding,

title={Breeding value accuracy estimates for growth traits using random regression and multi-trait models in Nelore cattle},
author={Boligon, AA and Baldi, F. and Mercadante, MEZ and Lobo, RB and Pereira, RJ and Albuquerque, LG},
journal={Genetics and Molecular Research},
volume={10},
number={2},
pages={1227--1236},
year={2011},
 url={http://dx.doi.org/10.4238/vol10-2gmr1087}

}

@ARTICLE{BOLIGON2011,

  author = {Boligon, A. A. and Baldi, F. and Albuquerque, L. G.},
   title = {Genetic parameters and relationships between growth traits and scrotal circumference measured at different ages in Nellore cattle},
 journal = {Genetics and Molecular Biology},
  volume = {34},
    year = {2011},
   pages = {225 -- 230},
     url = {http://dx.doi.org/10.1590/S1415-47572011005000004}

}

@ARTICLE{flori2011immunity,
   author = {Flori, L. and Gao, Y. and Lalo{\{\"{e}}}, D. and Lemonnier, G. and Leplat, J. J. and Teillaud, A. and Cossalter, A. M. and Laffitte, J. and Pinton, P. and de Vaureix, C. and others},
    title = {Immunity Traits in Pigs: Substantial Genetic Variation and Limited Covariation},
  journal = {PLoS ONE},
   volume = {6},
   number = {7},
     year = {2011},
    pages = {e22717},
    url ={http://dx.doi.org/10.1371/journal.pone.0022717}

}

@article{pereira2011effect,
title={Effect of pregnancy on the genetic evaluation of dairy cattle},
author={Pereira, RJ and Santana Jr, ML and Bignardi, AB and Verneque, RS and El Faro, L. and Albuquerque, LG},
journal={Genetics and Molecular Research},
volume={10},
number={3},
pages={2190--2201},
year={2011}

}

@ARTICLE{mari2010bb,

  author = {Tyrisev{\"{a}}, A. -M. and Meyer, K. and Fikse, W. F. and Ducrocq, V. and Jakobsen, J. and Lidauer, M. H. and M{\"{a}}ntysaari, E. A.},
   title = {Principal component and factor analytic models in international sire evaluation},
 journal = {Genet. Select. Evol.},
  volume = {43},
    year = {2011},
   pages = {33},
     doi = {10.1186/1297-9686-43-33}

}

</bibtex>

2012

<bibtex> @article {springerlink:10.1007/s11284-011-0880-x,

 author = {Tsujino, Masahiro and Takahashi, Kazuo},
 title = {Natural genetic variation in fluctuating asymmetry of wing shape in Drosophila melanogaster},
 journal = {Ecological Research},
 volume ={27},
 number={1},
   pages = {133--143},
 url = {http://dx.doi.org/10.1007/s11284-011-0880-x},
year={2012}

}

@ARTICLE{bol,

  author = {Boligon, A. A. and Mercadante, M. E. Z. and Lobo, R. B. and Baldi, F. and Albuquerque, L. G.},
   title = {Random regression analyses using B-spline functions to model growth of Nellore cattle},
 journal = {Animal},
    year = {2012},
    volume={6},
   pages = {212--220},
     url = {http://dx.doi.org/10.1017/s1751731111001534}

}

  @article{aykanat2012sex,
title={Sex-biased genetic component distribution among populations: additive genetic and maternal contributions to phenotypic differences among populations of Chinook salmon},
author={Aykanat, T. and Bryden, CA and Heath, DD},
journal={Journal of Evolutionary Biology},
year={2012},
url ={http://dx.doi.org/10.1111/j.1420-9101.2012.02462.x}

}

@article{blomquist2012female,

title={Female Age of First Reproduction at Cayo Santiago: Heritability and Shared Environments},
author={Blomquist, G.E.},
journal={Bones, Genetics, and Behavior of Rhesus Macaques},
pages={195--208},
year={2012},
publisher={Springer}
url={http://dx.doi.org/10.1007/978-1-4614-1046-1_9}

}

@ARTICLE{sant2012genetic,

   author = {Sant'Anna, AC and da Costa, M. J. R. P. and Baldi, F. and Rueda, PM and Albuquerque, LG},
    title = {Genetic associations between flight speed and growth traits in Nellore cattle},
  journal = {Journal of Animal Science},
     year = {2012},
url={http://dx.doi.org/10.2527/jas.2011-5044 }
  }
  @ARTICLE{wolak2012nadiv,
  author = {Wolak, M. E.},
   title = {nadiv: an R package to create relatedness matrices for estimating non-additive genetic variances in animal models},
 journal = {Methods in Ecology and Evolution},
    year = {2012},
     url = {http://dx.doi.org/10.1111/j.2041-210X.2012.00213.x}

}

@article{CambridgeJournals:8519228, author = {Aspilcueta-Borquis, Rúsbel R. and Araujo Neto, Francisco R. and Baldi, Fernando and Santos, Daniel J. A. and Albuquerque, Lucia G. and Tonhati, Humberto}, title = {Genetic parameters for test-day yield of milk, fat and protein in buffaloes estimated by random regression models}, journal = {Journal of Dairy Research}, volume = {FirstView}, pages = {1-8}, year = {2012}, URL = {http://dx.doi.org/10.1017/S0022029912000143}, }

@ARTICLE{bignardi2012,

  author = {Bignardi, A. B. and El Faro, L. and Rosa, G. J. M. and Cardoso, V. L. and Machado, P. F. and Albuquerque, L. G.},
   title = {Short communication: Principal components and factor analytic models for test-day milk yield in Brazilian Holstein cattle},
 journal = {Journal of Dairy Science},
  volume = {95},
  number = {4},
    year = {2012},
   URL = {http://dx.doi.org/10.3168/jds.2011-4494},
     doi = {10.3168/jds.2011-4494}

}

@article{pereira2012milk,

title={Milk yield persistency in Brazilian Gyr cattle based on a random regression model},
author={Pereira, RJ and Verneque, RS and Lopes, PS and Santana Jr, ML and Lagrotta, MR and Torres, RA and Filho, A.E.V. and Machado, MA},
journal={Genetics and Molecular Research},
volume={11},
number={2},
pages={1599--1609},
year={2012},

URL = {http://dx.doi.org/10.4238/2012.June.15.9}, }

@article{govignon2012genetic,

title={Genetic evaluation of mastitis in dairy cattle in France},
author={Govignon-Gion, A. and Dassonneville, R. and Baloche, G. and Ducrocq, V.},
journal={Interbull Bulletin},
number={46},
year={2012}

}

</bibtex>

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