Download WOMBAT Examples
The worked
Examples are provided in compressed form, as gzipped
tar files. On extraction, files will be placed into the directory
Examples/Examplen where
n is the example
number. Individual runs are shown in subdirectories
A,
B,
C, etc. The file
WhatIsIt gives a brief decription of what is what. Some directories contain an additional pdf
file with documentation.
-
example1.tar.gz Simple univariate analysis
Size: 16 KB, 4775 downloads (since April 28,
2010), Version: 07/02/20.
-
example2.tar.gz Bivariate analysis with additional random effect
Size: 53 KB, 2806 downloads (since April 28,
2010), Version: 07/02/20.
-
example3.tar.gz Longitudinal data: RR analysis
Size: 268 KB, 2229 downloads (since April 28,
2010), Version: 07/02/20.
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example4.tar.gz 4-trait analysis
Size: 1.82 MB, 1466 downloads (since April 28,
2010), Version: 07/02/20.
-
example5.tar.gz 6 traits
Size: 131.84 MB, 1037 downloads (since April 28,
2010), Version: 07/02/20.
-
example6.tar.gz 8 traits
Size: 3.24 MB, 1069 downloads (since April 28,
2010), Version: 07/02/20.
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example7.tar.gz 4 weights subject to maternal effects
Size: 3.82 MB, 1432 downloads (since April 28,
2010), Version: 07/02/20.
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example8.tar.gz Bivariate analysis, repeated records for one trait
Size: 5.20 MB, 1107 downloads (since April 28,
2010), Version: 07/02/20.
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example9.tar.gz Random regression analysis
Size: 8.20 MB, 1272 downloads (since April 28,
2010), Version: 07/02/20.
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example10.tar.gz The gryphon example from Wilson et al
Size: 249 KB, 1296 downloads (since April 28,
2010), Version: 07/02/20.
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example11.tar.gz Multivariate RR analysis
Size: 650 KB, 1512 downloads (since April 28,
2010), Version: 07/02/20.
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example12.tar.gz Use of WOMBAT for stand-alone matrix inversion
Size: 5 KB, 188 downloads (since July 10,
2019), Version: 07/02/20.
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example13.tar.gz Multivariate analyses with repeated records
Size: 1.90 MB, 1097 downloads (since September 23,
2011), Version: 07/02/20.
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example14.tar.gz GWAS analysis (SNP Snappy)
Size: 101 KB, 1491 downloads (since September 21,
2011), Version: 07/02/20.
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example15.tar.gz "Pooling" using penalized likelihood; updated: include tutorial.
Size: 408 KB, 977 downloads (since April 24,
2012), Version: 07/02/20.
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example16.tar.gz Fitting of "social" genetic effects models
Size: 2.05 MB, 820 downloads (since August 15,
2012), Version: 07/02/20.
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example17.tar.gz Sampling based approximation of standard errors
Size: 39 KB, 1037 downloads (since July 22,
2013), Version: 07/02/20.
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example18.tar.gz Basic single step BLUP module
Size: 206 KB, 1086 downloads (since April 30,
2014), Version: 07/02/20.
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example19.tar.gz Penalized REML estimation for "simple" penalties
Size: 3.48 MB, 630 downloads (since December 15,
2015), Version: 07/02/20.
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example20.tar.gz New: use of module hinverse (includes documentation)
Size: 18.02 MB, 477 downloads (since October 17,
2017), Version: 07/02/20.
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example21.tar.gz Additional options for single-step BLUP
Size: 3.81 MB, 570 downloads (since January 25,
2018), Version: 07/02/20.
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example22.tar.gz New: 'Back-solve' for marker effects from genomic breeding values
Size: 306 KB, 203 downloads (since September 13,
2019), Version: 20/10/20.
- All examples, packaged in two big files:
example1to12.tar.gz
Size: 155.33 MB, 179 downloads (since July 10,
2019), Version: 07/02/20.
example13to21.tar.gz
Size: 30.54 MB, 169 downloads (since July 10,
2019), Version: 07/02/20.
Note for Windows users: The files in the Example
directories are Linux files. Linux and Windows differ in the
`end-of-line' codes used. Hence, you may need to convert the files provided
before being able to repeat the analyses; look for a
tool like like `unix2dos'!