Chapter 5
Run options

 5.1 Overview
 5.2 Basic run options
  5.2.1 Continuation run
  5.2.2 Level of screen output
  5.2.3 Set-up steps
  5.2.4 Quality of starting values
  5.2.5 Numerical settings
  5.2.6 Intermediate results
  5.2.7 Prediction only
  5.2.8 Simulation only
  5.2.9 Sampling to approximate standard errors
  5.2.10 Matrix inversion only
  5.2.11 Calculation of genomic relationships or H −1
  5.2.12 Quadratic approximation
  5.2.13 Analyses of subsets of traits
  5.2.14 Pooling estimates of covariance components from part analyses
  5.2.15 Miscellaneous
 5.3 Advanced run options
  5.3.1 Ordering strategies
  5.3.2 REML algorithms
  5.3.3 Parameterisation
  5.3.4 Matrix storage mode
  5.3.5 Sparse matrix factorisation, auto-differentiation and inversion
  5.3.6 Other
 5.4 Parameter file name