Chapter 7
Output generated by WOMBAT

This chapter describes the files written out by WOMBAT. These comprise ‘internal’ files generated by WOMBAT for use within a run (and thus of limited interest to the user), and various output files. Most files have default names, independent of the analysis.

 7.1 Main results files
  7.1.1 File SumPedigrees.out
  7.1.2 File SumModel.out
  7.1.3 File SumEstimates.out
  7.1.4 File BestSoFar.out
  7.1.5 File FixSolutions.out
  7.1.6 File SumSampleAI.out
 7.2 Additional results
  7.2.1 File Residuals.dat
  7.2.2 File(s) RnSoln_rname.dat
  7.2.3 File(s) Curve_cvname(_trname).dat
  7.2.4 File(s) RanRegname.dat
  7.2.5 Files SimDatan.dat
  7.2.6 Files EstimSubSetn+...  +m.dat
  7.2.7 Files PDMatrix.dat and PDBestPoint
  7.2.8 Files PoolEstimates.out and PoolBestPoint
  7.2.9 Files MME*.dat
  7.2.10 File QTLSolutions.dat
  7.2.11 Files Pen*(.dat) and ValidateLogLike.dat
  7.2.12 File CovSamples_name  .dat
 7.3 ‘Utility’ files
  7.3.1 File ListOfCovs
  7.3.2 File RepeatedRecordsCounts
  7.3.3 File BestPoint
  7.3.4 File Iterates
  7.3.5 File OperationCounts
  7.3.6 Files AvInfoParms and AvinfoCovs
  7.3.7 Files Covariable.baf
  7.3.8 File LogL4Quapprox.dat
  7.3.9 File SubSetsList
 7.4 Miscellaneous
  7.4.1 File ReducedPedFile.dat
  7.4.2 Files PrunedPedFilen   .dat
  7.4.3 File WOMBAT.log